Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0007_K02
         (601 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1...    34   0.014
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc...    31   0.17 
SPBC1347.05c |||DNAJ domain protein Scj1|Schizosaccharomyces pom...    30   0.30 
SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase Mde10|S...    29   0.39 
SPBC1289.12 |usp109||U1 snRNP-associated protein Usp109|Schizosa...    28   1.2  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    26   3.7  
SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr 2||...    26   3.7  
SPBC16A3.19 |||histone acetyltransferase complex subunit Eaf7 |S...    26   4.8  
SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase Ubp7|Schizosa...    26   4.8  

>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 857

 Score = 34.3 bits (75), Expect = 0.014
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -3

Query: 329 PGIPDGPIGPMSPFSPVSPMRPVSPLAP 246
           P +P  P+ P+ P +P  P  PV+P+AP
Sbjct: 587 PSVPQPPVAPVVPEAPSVPQPPVAPVAP 614



 Score = 28.7 bits (61), Expect = 0.69
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -3

Query: 335 VNPGIPDGPIGPMSPFSPVSPMRPVSPLAP 246
           V P +P+ P  P  P +PV+P  P  P  P
Sbjct: 594 VAPVVPEAPSVPQPPVAPVAPEVPSVPQRP 623



 Score = 27.5 bits (58), Expect = 1.6
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -3

Query: 329 PGIPDGPIGPMSPFSPVSPMRPVSPLAP 246
           P +P  P  P+ P +   P  PV+P+AP
Sbjct: 557 PSVPQRPAVPVVPEALSVPQPPVAPVAP 584



 Score = 26.2 bits (55), Expect = 3.7
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = -3

Query: 329 PGIPDGPIGPMSPFSPVSPMRPVSPLAP 246
           P +P+ P  P  P +PV P  P  P  P
Sbjct: 626 PVVPEAPSVPQPPAAPVVPEVPSVPQRP 653



 Score = 26.2 bits (55), Expect = 3.7
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = -3

Query: 329 PGIPDGPIGPMSPFSPVSPMRPVSPLAP 246
           P +P+ P  P  P +PV P  P  P  P
Sbjct: 656 PVVPEAPSVPQPPAAPVVPEVPSVPQPP 683



 Score = 25.0 bits (52), Expect = 8.5
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = -3

Query: 329 PGIPDGPIGPMSPFSPVSPMRPVSPLAP 246
           P +P+ P     P +PV+P  P +P  P
Sbjct: 521 PVVPEAPSVHQPPAAPVAPEVPSAPQRP 548



 Score = 25.0 bits (52), Expect = 8.5
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = -3

Query: 329 PGIPDGPIGPMSPFSPVSPMRPVSPLAPI 243
           P +P+    P  P +PV+P  P  P  P+
Sbjct: 566 PVVPEALSVPQPPVAPVAPEVPSVPQPPV 594


>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 587

 Score = 30.7 bits (66), Expect = 0.17
 Identities = 21/77 (27%), Positives = 28/77 (36%)
 Frame = +1

Query: 1   GRDGLDGQKGDQGPIGPVGLMGPTGYPGPKGDRGLPGLSINIKGDKGEVGPPGITGAEGQ 180
           G  G+      Q P+ P G+  P G P P    G P +   + G  G   PPG  G+   
Sbjct: 510 GAPGMPNLNMSQPPMVPPGMALPPGMPAP--FPGYPAVPA-MPGIPGATAPPGAPGSYNT 566

Query: 181 KGERGLEGAQGLQGEKG 231
                L    G+    G
Sbjct: 567 SESSNLNAPPGVSMPNG 583



 Score = 29.1 bits (62), Expect = 0.52
 Identities = 14/45 (31%), Positives = 17/45 (37%)
 Frame = +1

Query: 430 PGLPGRIGVPGIPGALGQKGQKGELGREGIAGQPGNDGAQGPTGF 564
           PG P    +PGIPGA    G  G       +      G   P G+
Sbjct: 540 PGYPAVPAMPGIPGATAPPGAPGSYNTSESSNLNAPPGVSMPNGY 584



 Score = 25.4 bits (53), Expect = 6.4
 Identities = 18/58 (31%), Positives = 22/58 (37%), Gaps = 10/58 (17%)
 Frame = +1

Query: 427 LPGLPGRIGVPGI---------PGALGQKGQKGEL-GREGIAGQPGNDGAQGPTGFPG 570
           LP +PG  G+P +         PG     G      G   +   PG  GA  P G PG
Sbjct: 505 LPPIPGAPGMPNLNMSQPPMVPPGMALPPGMPAPFPGYPAVPAMPGIPGATAPPGAPG 562



 Score = 25.0 bits (52), Expect = 8.5
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +1

Query: 427 LPGLPGRIGVPGIPGA 474
           +PG+PG    PG PG+
Sbjct: 548 MPGIPGATAPPGAPGS 563


>SPBC1347.05c |||DNAJ domain protein Scj1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 381

 Score = 29.9 bits (64), Expect = 0.30
 Identities = 12/22 (54%), Positives = 13/22 (59%)
 Frame = +1

Query: 505 GREGIAGQPGNDGAQGPTGFPG 570
           G EG+ GQPG  G     GFPG
Sbjct: 72  GEEGLNGQPGGPGGGPGEGFPG 93


>SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase
           Mde10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 512

 Score = 29.5 bits (63), Expect = 0.39
 Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
 Frame = -1

Query: 463 FPALQ-FFLEVLVDLDHPSHQVHQVYLDDHVYQEFQEVLFL-RQSLIQEFQMDPLVL 299
           FPALQ  ++ V+ D  + +H   ++    H++QEF+ V  L   S     Q+  L+L
Sbjct: 61  FPALQTLWIGVVADCSYVTHFTSRMEAKKHIFQEFEGVSTLYEDSFNINVQIHSLIL 117


>SPBC1289.12 |usp109||U1 snRNP-associated protein
           Usp109|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 352

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -3

Query: 335 VNPGIPDGPIGPMSPFSPVSP 273
           V P + D P  P +PFSP++P
Sbjct: 267 VYPSMKDVPNNPFTPFSPINP 287



 Score = 25.0 bits (52), Expect = 8.5
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = -3

Query: 344 PTIVNPGIPDGPIGPMSPFSPVSPMRP 264
           P +  P  P     P +PF+P SP+ P
Sbjct: 261 PALAAPVYPSMKDVPNNPFTPFSPINP 287


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = -3

Query: 332  NPGIPDGPIGPMSPFSPVSPMRPVSPLAP 246
            NPG P      + P +P+  + PV P AP
Sbjct: 1435 NPGAPSNHAPQVVPPAPMHAVAPVQPKAP 1463


>SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1157

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 12/19 (63%), Positives = 14/19 (73%), Gaps = 2/19 (10%)
 Frame = -3

Query: 293 PFSPVSPMRP--VSPLAPI 243
           PFSPVSP  P  ++PL PI
Sbjct: 186 PFSPVSPSNPNFLTPLKPI 204


>SPBC16A3.19 |||histone acetyltransferase complex subunit Eaf7
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 272

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 11/20 (55%), Positives = 16/20 (80%)
 Frame = +2

Query: 167 EPKVKRERGV*RELKDSKVK 226
           EP+VK+E  + +E K+SKVK
Sbjct: 154 EPEVKQETNLQKEKKESKVK 173


>SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase
           Ubp7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 875

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 10/35 (28%), Positives = 22/35 (62%)
 Frame = -1

Query: 412 SHQVHQVYLDDHVYQEFQEVLFLRQSLIQEFQMDP 308
           +H++ ++ LDD + +EF+ + F   S+ +  Q+ P
Sbjct: 304 AHELLRLLLDDLISEEFRVLRFNLNSVSRSLQLSP 338


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.309    0.147    0.449 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,171,806
Number of Sequences: 5004
Number of extensions: 38408
Number of successful extensions: 91
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 43 (22.0 bits)