Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0007_K01
(618 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase Mde10|S... 33 0.044
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 30 0.31
SPAC18G6.10 |||chromosome segregation protein |Schizosaccharomyc... 29 0.71
SPBC17D11.04c |||histone acetyltransferase complex subunit Nto1 ... 27 1.6
SPBC1539.05 |cog3||Golgi transport complex subunit Cog3 |Schizos... 27 2.9
SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces pomb... 26 3.8
SPBC359.01 ||SPBPB10D8.08|amino acid permease, unknown 7|Schizos... 25 6.6
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po... 25 6.6
SPBC29B5.01 |atf1|mts1, sss1, gad7|transcription factor Atf1|Sch... 25 8.8
SPBC359.03c |||amino acid permease, unknown 8|Schizosaccharomyce... 25 8.8
SPCC736.12c |||conserved protein|Schizosaccharomyces pombe|chr 3... 25 8.8
>SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase
Mde10|Schizosaccharomyces pombe|chr 1|||Manual
Length = 512
Score = 32.7 bits (71), Expect = 0.044
Identities = 39/171 (22%), Positives = 59/171 (34%), Gaps = 17/171 (9%)
Frame = +2
Query: 146 CNNGFQLVNSSCEPVCNTSCQNGRCVAPNTCECNNGFQL--VNGSCEPVCNTSCQNGIC- 316
C NG C+ C C+N C TC+ G +C C+ +C
Sbjct: 318 CGNGIVEDGEECD--CGEDCENNPCCDGKTCKLTKGSLCDDQQDACCYQCHFKNAGTLCR 375
Query: 317 IAPNTCECNNGFQLVNSSCE--------PVCNT-----SCQNGRCVAPNTCECNNGFQLV 457
+ N C+ ++S C +C SC +G C + + +C
Sbjct: 376 QSTNPCDKPEFCTGISSKCPVDENWDDGRICQDSLGMGSCASGVCTSASR-QCKKLTNFS 434
Query: 458 NGSC-EPVCNTSCQNGICVAPNTCECNNGFQLVNSSCEPVCNTSCHNGRCV 607
+ SC C SCQN TC + + + C C+NG CV
Sbjct: 435 SLSCHSDSCKVSCQN----EDGTCFISAKDYIDGTRCR---GGLCYNGVCV 478
Score = 30.3 bits (65), Expect = 0.23
Identities = 37/157 (23%), Positives = 56/157 (35%), Gaps = 25/157 (15%)
Frame = +2
Query: 95 CNTSCQNGICIAPNTCECNNGFQLVNSSCEPVC--------NTSCQNGR--CVAPNTCEC 244
C C+N C TC+ G L + + C T C+ C P C
Sbjct: 331 CGEDCENNPCCDGKTCKLTKG-SLCDDQQDACCYQCHFKNAGTLCRQSTNPCDKPEFCTG 389
Query: 245 NNGFQLVNGSCEP--VCNT-----SCQNGICIAPNTCECNNGFQLVNSSC-EPVCNTSCQ 400
+ V+ + + +C SC +G+C + + +C + SC C SCQ
Sbjct: 390 ISSKCPVDENWDDGRICQDSLGMGSCASGVCTSASR-QCKKLTNFSSLSCHSDSCKVSCQ 448
Query: 401 N--GRCVAP-----NTCECNNGFQLVNGSCEPVCNTS 490
N G C + C G NG C P+ +S
Sbjct: 449 NEDGTCFISAKDYIDGTRCRGGL-CYNGVCVPIEGSS 484
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 29.9 bits (64), Expect = 0.31
Identities = 42/177 (23%), Positives = 61/177 (34%), Gaps = 17/177 (9%)
Frame = +2
Query: 119 ICIAPNTCECNNGFQLVNSSCEPVCNTS-CQNGRCVAPN----TCECNNGFQLVNGSC-E 280
IC P CN N C+ +C+ C RC+ + C C +C
Sbjct: 584 ICFRP----CNKKLSCGNHFCQHMCHRGPCP--RCLEASFEELPCTCGRTRLYPPVACGT 637
Query: 281 PVCNTSCQNGICIAPNTC---ECNNGFQLVNSSCEPVCNTSCQNGRCVAPNTCECNNGFQ 451
P+ C +C+ P +C + + + C P C + RC+ N
Sbjct: 638 PI--PDCPY-LCVLPKSCHHPQVKHNCHPTSEPCPP-CPYFVKK-RCLCGKHILENQPCY 692
Query: 452 LVNGSCEPVCNT--SCQNG----ICVAPNTCE--CNNGFQLVNSSCEPVCNTSCHNG 598
N C +CN SC+ +C CE C CE VC + CH G
Sbjct: 693 RENVRCGELCNKLLSCKTHFCEKLCHPDGECESSCKKECGKRRMYCEHVCQSPCHAG 749
Score = 26.6 bits (56), Expect = 2.9
Identities = 25/101 (24%), Positives = 39/101 (38%), Gaps = 3/101 (2%)
Frame = +2
Query: 317 IAPNTCECNNGFQLVNSSCEPVCNTSCQNGRCV-APNTCE--CNNGFQLVNGSCEPVCNT 487
+ P++C G + CE C C G C T E C G + ++ C +
Sbjct: 273 LVPHSCGDPCG-KTRGQDCEHPCPLLCHPGPCPPCTATVEKFCLCGKESIHARCSNISKV 331
Query: 488 SCQNGICVAPNTCECNNGFQLVNSSCEPVCNTSCHNGRCVA 610
+ + C N C+ +L+ E C CH+G C A
Sbjct: 332 NTEPFRC--ENVCD-----ELLPCG-EHTCKKRCHSGLCGA 364
Score = 25.4 bits (53), Expect = 6.6
Identities = 41/182 (22%), Positives = 57/182 (31%), Gaps = 16/182 (8%)
Frame = +2
Query: 107 CQNGICIAPNTCECNNGFQLVNSSCEPVCNTSCQNGRCVA---PNTCECNNGFQLVNGSC 277
C N + C N + E C C +G C A P +C G C
Sbjct: 325 CSNISKVNTEPFRCENVCDELLPCGEHTCKKRCHSGLCGACFEPINAKCYCGLHSKTYPC 384
Query: 278 E----PVCNTSCQNGI---------CIAPNTCECNNGFQLVNSSCEPVCNTSCQNGRCVA 418
P + +NG C P T + G + +C P+ T
Sbjct: 385 SSLPSPSISKKDENGSVKEWFGYYSCNNPCTLFFDCGLHKCSKTCHPISETRAHCPFATD 444
Query: 419 PNTCECNNGFQLVNGSCEPVCNTSCQNGICVAPNTCECNNGFQLVNSSCEPVCNTSCHNG 598
T +C G + ++ + SC + I N C G L SC C CH G
Sbjct: 445 VLT-KCPCGKEDISFLLKGHERKSCSDPIPTCENIC----GKLL---SCGHRCKYKCHLG 496
Query: 599 RC 604
C
Sbjct: 497 SC 498
>SPAC18G6.10 |||chromosome segregation protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 688
Score = 28.7 bits (61), Expect = 0.71
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = +2
Query: 476 VCNTSCQNGICVAPNTCECNNGFQL 550
+C T N IC +PN EC G+ L
Sbjct: 367 LCRTCPPNAICPSPNYVECKPGYVL 391
Score = 28.3 bits (60), Expect = 0.94
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = +2
Query: 92 VCNTSCQNGICIAPNTCECNNGFQL 166
+C T N IC +PN EC G+ L
Sbjct: 367 LCRTCPPNAICPSPNYVECKPGYVL 391
Score = 28.3 bits (60), Expect = 0.94
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = +2
Query: 284 VCNTSCQNGICIAPNTCECNNGFQL 358
+C T N IC +PN EC G+ L
Sbjct: 367 LCRTCPPNAICPSPNYVECKPGYVL 391
Score = 26.2 bits (55), Expect = 3.8
Identities = 11/33 (33%), Positives = 16/33 (48%)
Frame = +2
Query: 164 LVNSSCEPVCNTSCQNGRCVAPNTCECNNGFQL 262
++ S +C T N C +PN EC G+ L
Sbjct: 359 ILGISFPSLCRTCPPNAICPSPNYVECKPGYVL 391
Score = 26.2 bits (55), Expect = 3.8
Identities = 11/33 (33%), Positives = 16/33 (48%)
Frame = +2
Query: 356 LVNSSCEPVCNTSCQNGRCVAPNTCECNNGFQL 454
++ S +C T N C +PN EC G+ L
Sbjct: 359 ILGISFPSLCRTCPPNAICPSPNYVECKPGYVL 391
>SPBC17D11.04c |||histone acetyltransferase complex subunit Nto1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 767
Score = 27.5 bits (58), Expect = 1.6
Identities = 17/39 (43%), Positives = 20/39 (51%)
Frame = +2
Query: 182 EPVCNTSCQNGRCVAPNTCECNNGFQLVNGSCEPVCNTS 298
EPV +GRCV N EC N +V C+ CNTS
Sbjct: 185 EPVRVEDELDGRCVICNEAECENSNAIV--FCDN-CNTS 220
Score = 27.5 bits (58), Expect = 1.6
Identities = 17/39 (43%), Positives = 20/39 (51%)
Frame = +2
Query: 374 EPVCNTSCQNGRCVAPNTCECNNGFQLVNGSCEPVCNTS 490
EPV +GRCV N EC N +V C+ CNTS
Sbjct: 185 EPVRVEDELDGRCVICNEAECENSNAIV--FCDN-CNTS 220
Score = 27.1 bits (57), Expect = 2.2
Identities = 17/41 (41%), Positives = 20/41 (48%)
Frame = +2
Query: 470 EPVCNTSCQNGICVAPNTCECNNGFQLVNSSCEPVCNTSCH 592
EPV +G CV N EC N +V C+ CNTS H
Sbjct: 185 EPVRVEDELDGRCVICNEAECENSNAIV--FCDN-CNTSVH 222
>SPBC1539.05 |cog3||Golgi transport complex subunit Cog3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 735
Score = 26.6 bits (56), Expect = 2.9
Identities = 11/25 (44%), Positives = 18/25 (72%)
Frame = -3
Query: 76 VNELKPLLHSQVFGATQLPLVHSCL 2
++++ L++SQVF L LVHSC+
Sbjct: 508 LSKIYRLVNSQVFDEIALELVHSCI 532
>SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 741
Score = 26.2 bits (55), Expect = 3.8
Identities = 20/67 (29%), Positives = 29/67 (43%)
Frame = +2
Query: 245 NNGFQLVNGSCEPVCNTSCQNGICIAPNTCECNNGFQLVNSSCEPVCNTSCQNGRCVAPN 424
NN +NG P N +NG + NT + N+ S+ + N + QN + N
Sbjct: 420 NNNLLNLNGIFHPDHNAQTENGQTLPENTDDTNSN---ATSAVPNLQNLNQQNAVTMGTN 476
Query: 425 TCECNNG 445
T NNG
Sbjct: 477 T--PNNG 481
Score = 25.8 bits (54), Expect = 5.0
Identities = 18/67 (26%), Positives = 29/67 (43%)
Frame = +2
Query: 149 NNGFQLVNSSCEPVCNTSCQNGRCVAPNTCECNNGFQLVNGSCEPVCNTSCQNGICIAPN 328
NN +N P N +NG+ + NT + N+ + + N + QN + + N
Sbjct: 420 NNNLLNLNGIFHPDHNAQTENGQTLPENTDDTNSN---ATSAVPNLQNLNQQNAVTMGTN 476
Query: 329 TCECNNG 349
T NNG
Sbjct: 477 T--PNNG 481
>SPBC359.01 ||SPBPB10D8.08|amino acid permease, unknown
7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 581
Score = 25.4 bits (53), Expect = 6.6
Identities = 11/42 (26%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Frame = +3
Query: 63 FNSLTVAVNPYAIHL-AKMEFA*RRILVNVTMGFNLLTVVVN 185
F ++ + +N + + ++EF I V T+GF +L +++N
Sbjct: 196 FLAVVIVINLFGVRAYGEVEFILSTIKVIATVGFIILAIIIN 237
Score = 25.4 bits (53), Expect = 6.6
Identities = 11/42 (26%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Frame = +3
Query: 255 FNSLTVAVNPYAIHL-AKMEFA*RRILVNVTMGFNLLTVVVN 377
F ++ + +N + + ++EF I V T+GF +L +++N
Sbjct: 196 FLAVVIVINLFGVRAYGEVEFILSTIKVIATVGFIILAIIIN 237
>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1014
Score = 25.4 bits (53), Expect = 6.6
Identities = 8/23 (34%), Positives = 11/23 (47%)
Frame = -2
Query: 353 ETHCYIHKYSALCKFHFGKMYCI 285
+ H + CKFHF K C+
Sbjct: 148 DAHSLFERAYQTCKFHFSKSQCV 170
Score = 25.4 bits (53), Expect = 6.6
Identities = 8/23 (34%), Positives = 11/23 (47%)
Frame = -2
Query: 161 ETHCYIHKYSALCKFHFGKMYCI 93
+ H + CKFHF K C+
Sbjct: 148 DAHSLFERAYQTCKFHFSKSQCV 170
>SPBC29B5.01 |atf1|mts1, sss1, gad7|transcription factor
Atf1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 566
Score = 25.0 bits (52), Expect = 8.8
Identities = 20/56 (35%), Positives = 24/56 (42%), Gaps = 2/56 (3%)
Frame = +2
Query: 167 VNSSCEPVCNTSCQNGRCVAPNTCECNNGFQLVNGSCEPVCNTSCQN--GICIAPN 328
VN+S EP + NG A +T N + S P N S QN IAPN
Sbjct: 6 VNTSTEPASVAAVSNGNATASSTQVPENN---QSDSFAPPSNNSQQNQQSSTIAPN 58
>SPBC359.03c |||amino acid permease, unknown 8|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 579
Score = 25.0 bits (52), Expect = 8.8
Identities = 11/42 (26%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Frame = +3
Query: 63 FNSLTVAVNPYAIHL-AKMEFA*RRILVNVTMGFNLLTVVVN 185
F + + +N + + + ++EF I V T+GF +L +++N
Sbjct: 196 FLVVVIGINLFGVRVFGEVEFVLALIKVVATVGFIILAIIIN 237
Score = 25.0 bits (52), Expect = 8.8
Identities = 11/42 (26%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Frame = +3
Query: 255 FNSLTVAVNPYAIHL-AKMEFA*RRILVNVTMGFNLLTVVVN 377
F + + +N + + + ++EF I V T+GF +L +++N
Sbjct: 196 FLVVVIGINLFGVRVFGEVEFVLALIKVVATVGFIILAIIIN 237
>SPCC736.12c |||conserved protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 437
Score = 25.0 bits (52), Expect = 8.8
Identities = 12/27 (44%), Positives = 15/27 (55%), Gaps = 3/27 (11%)
Frame = -1
Query: 447 NPLLHSQV---FGATHLPFWQDVLHTG 376
N L ++QV +T LPFW D H G
Sbjct: 402 NALGYAQVVSDLNSTELPFWSDSSHAG 428
Score = 25.0 bits (52), Expect = 8.8
Identities = 12/27 (44%), Positives = 15/27 (55%), Gaps = 3/27 (11%)
Frame = -1
Query: 255 NPLLHSQV---FGATHLPFWQDVLHTG 184
N L ++QV +T LPFW D H G
Sbjct: 402 NALGYAQVVSDLNSTELPFWSDSSHAG 428
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,978,772
Number of Sequences: 5004
Number of extensions: 73000
Number of successful extensions: 227
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 217
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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