Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0007_K01
         (618 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 vari...    24   1.0  
DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 vari...    24   1.4  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       21   9.6  
AY588474-1|AAT94401.1|  104|Apis mellifera defensin 2 protein.         21   9.6  

>DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 variant
           2 precursor protein.
          Length = 94

 Score = 24.2 bits (50), Expect = 1.0
 Identities = 18/60 (30%), Positives = 23/60 (38%), Gaps = 3/60 (5%)
 Frame = +2

Query: 236 CECNNGFQLVNGSCEPVCNTSCQNGICI---APNTCECNNGFQLVNSSCEPVCNTSCQNG 406
           C  N  F   +G C+  C       +CI   AP  C C  G+ L N     V  + C  G
Sbjct: 37  CPSNEIFSRCDGRCQRFCPNVVPKPLCIKICAPG-CVCRLGY-LRNKKKVCVPRSKCLPG 94



 Score = 23.4 bits (48), Expect = 1.8
 Identities = 12/42 (28%), Positives = 17/42 (40%), Gaps = 3/42 (7%)
 Frame = +2

Query: 428 CECNNGFQLVNGSCEPVCNTSCQNGICV---APNTCECNNGF 544
           C  N  F   +G C+  C       +C+   AP  C C  G+
Sbjct: 37  CPSNEIFSRCDGRCQRFCPNVVPKPLCIKICAPG-CVCRLGY 77


>DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 variant
           1 precursor protein.
          Length = 92

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 13/42 (30%), Positives = 17/42 (40%), Gaps = 3/42 (7%)
 Frame = +2

Query: 236 CECNNGFQLVNGSCEPVCNTSCQNGICI---APNTCECNNGF 352
           C  N  F   +G C+  C       +CI   AP  C C  G+
Sbjct: 37  CPSNEIFSRCDGRCQRFCPNVVPKPLCIKICAPG-CVCRLGY 77



 Score = 23.4 bits (48), Expect = 1.8
 Identities = 12/42 (28%), Positives = 17/42 (40%), Gaps = 3/42 (7%)
 Frame = +2

Query: 428 CECNNGFQLVNGSCEPVCNTSCQNGICV---APNTCECNNGF 544
           C  N  F   +G C+  C       +C+   AP  C C  G+
Sbjct: 37  CPSNEIFSRCDGRCQRFCPNVVPKPLCIKICAPG-CVCRLGY 77


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = -3

Query: 313 NSILARCIAYGFTATVNE 260
           NSIL   +AYG T+ +++
Sbjct: 299 NSILKTVVAYGGTSVMHQ 316



 Score = 21.0 bits (42), Expect = 9.6
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = -3

Query: 121 NSILARCIAYGFTATVNE 68
           NSIL   +AYG T+ +++
Sbjct: 299 NSILKTVVAYGGTSVMHQ 316


>AY588474-1|AAT94401.1|  104|Apis mellifera defensin 2 protein.
          Length = 104

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 6/8 (75%), Positives = 8/8 (100%)
 Frame = +2

Query: 104 SCQNGICI 127
           SC+NG+CI
Sbjct: 94  SCRNGVCI 101



 Score = 21.0 bits (42), Expect = 9.6
 Identities = 6/8 (75%), Positives = 8/8 (100%)
 Frame = +2

Query: 296 SCQNGICI 319
           SC+NG+CI
Sbjct: 94  SCRNGVCI 101


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 206,033
Number of Sequences: 438
Number of extensions: 5085
Number of successful extensions: 11
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18337950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)