Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0007_J23
         (586 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0512 + 29675835-29675901,29676681-29676813,29677020-296771...    34   0.096
02_03_0273 + 17173983-17174339,17174423-17174575,17174638-171747...    32   0.39 
03_05_1110 - 30466886-30467317,30467522-30467603,30467749-30467810     29   2.1  
01_04_0121 - 16307839-16308315,16308394-16308793,16308978-163094...    28   6.3  
12_02_0127 + 13961726-13961947,13962050-13962121,13962288-139630...    27   8.3  
06_01_0293 - 2139421-2139600,2139716-2140471,2140830-2140935,214...    27   8.3  

>02_05_0512 +
           29675835-29675901,29676681-29676813,29677020-29677164,
           29677586-29678407
          Length = 388

 Score = 33.9 bits (74), Expect = 0.096
 Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = +3

Query: 12  TRCSWNRWSSRVRWCPWCSRIEWC-PRNERRPRVPW 116
           T C+ + W++  R  PW S   WC PR  R PR PW
Sbjct: 144 TDCTSSWWNAD-RSPPWWSPSRWCCPRGSRIPRSPW 178


>02_03_0273 +
           17173983-17174339,17174423-17174575,17174638-17174700,
           17174943-17175026,17175120-17175242,17175466-17175519,
           17175669-17175764,17176163-17176258,17177179-17177324,
           17178503-17178632,17178697-17179272,17179364-17179462,
           17179535-17179687,17179794-17180558,17181384-17181683
          Length = 1064

 Score = 31.9 bits (69), Expect = 0.39
 Identities = 14/32 (43%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
 Frame = +2

Query: 140 RVHKASKEYR-VNEEKSVLLEEMAHLAHQVHH 232
           R+ +  + YR   +EK VLLEE+ HL +Q+H+
Sbjct: 731 RIQEELERYRNFKDEKEVLLEEIQHLKNQLHY 762


>03_05_1110 - 30466886-30467317,30467522-30467603,30467749-30467810
          Length = 191

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = +3

Query: 51  WCPWCSRIEWCPRNERR 101
           WC WCS + W PR  RR
Sbjct: 21  WCNWCSSVVW-PRQPRR 36


>01_04_0121 -
           16307839-16308315,16308394-16308793,16308978-16309452,
           16309936-16310353
          Length = 589

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 12/45 (26%), Positives = 24/45 (53%)
 Frame = -2

Query: 558 SRNVLYYLISFYRHHWNRLTG**PVTAVVSARVITNVVEVTEKEW 424
           S NVL  +++FY HHW ++ G  P   ++   +++   +   + W
Sbjct: 74  SHNVLPRVLAFY-HHWKKIYGNPPPPPLLLNSILSQKQQPRTRRW 117


>12_02_0127 +
           13961726-13961947,13962050-13962121,13962288-13963058,
           13963401-13963573,13963973-13964083,13964114-13964460,
           13964627-13964652
          Length = 573

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = +3

Query: 6   RTTRCSWNRWSSRVRWCPWCSRIEWCP 86
           +T R     W +R RW P   +  WCP
Sbjct: 410 KTNRYFQLMWVTRKRWAPVYFKSNWCP 436


>06_01_0293 -
           2139421-2139600,2139716-2140471,2140830-2140935,
           2140999-2141249,2141342-2141443,2141557-2141876,
           2142350-2142546,2143668-2143786,2143876-2143997,
           2144877-2145081
          Length = 785

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 16/71 (22%), Positives = 29/71 (40%)
 Frame = +3

Query: 315 CKIMGRLFAIIYRRKRKGT*PRSRICRFMRTKVQYYAIXXXXXXXXXXXXXXXXXXXXVI 494
           CK++    + I+RRK KG+   ++IC  + +    Y +                     I
Sbjct: 136 CKLVLGSSSSIFRRKNKGSKTATKICECIPSFCTAYVVSKGKLSSVHSATSDAIGTPESI 195

Query: 495 NRSTYSNDACR 527
           + ST S+ + R
Sbjct: 196 SSSTVSSPSSR 206


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,880,513
Number of Sequences: 37544
Number of extensions: 313065
Number of successful extensions: 884
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 851
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 884
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1376330256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)