Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0007_J22
         (578 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharo...    27   2.6  
SPBC1604.15 |gpi16||pig-T |Schizosaccharomyces pombe|chr 2|||Manual    27   2.6  
SPAPB8E5.09 |||AAA family ATPase Rvb1 |Schizosaccharomyces pombe...    26   3.5  
SPAC4C5.03 |||CTNS domain protein |Schizosaccharomyces pombe|chr...    26   4.6  
SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|c...    25   6.1  

>SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2244

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = +3

Query: 516  FNRFTNYIYVRYNFVYH 566
            F  FTNY+Y  YN V H
Sbjct: 991  FPAFTNYLYTTYNAVEH 1007


>SPBC1604.15 |gpi16||pig-T |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 545

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +2

Query: 410 CFGIFCYCLISFNLIYVLVDVKYPYELF 493
           C  +F Y L+SF+L    +D  Y   LF
Sbjct: 6   CLLLFAYSLLSFSLTAATIDETYDESLF 33


>SPAPB8E5.09 |||AAA family ATPase Rvb1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 456

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 17/58 (29%), Positives = 29/58 (50%)
 Frame = +1

Query: 82  YIKCLENRVAVLENQNKALIEELKSLKELYCQQKTE*GPAG*VGTPLPGH*KQTAHAI 255
           Y   ++   A++EN  +A+   +K  KE+Y  + TE  P      PL G+ K  +H +
Sbjct: 103 YSSEIKKTEALMENFRRAIGLRVKETKEVYEGEVTEMVPEE-AENPLGGYGKTISHVL 159


>SPAC4C5.03 |||CTNS domain protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 302

 Score = 25.8 bits (54), Expect = 4.6
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +3

Query: 210 GYAAARTLKTNGTCYLMYLCARAVTDSYIDLC 305
           GY  +R   TN T Y+MY+ +  +    + LC
Sbjct: 232 GYLLSRLPGTNWTTYMMYIVSACLQGLLLMLC 263


>SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 796

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 10/35 (28%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = +2

Query: 401 LLICFGIFCYCLISFNLIYVLVD-VKYPYELFWYL 502
           + +C+ I    ++ F LIY ++  + Y YEL + +
Sbjct: 644 ICLCYSIISPLILVFGLIYFIIGFLVYKYELIYQM 678


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,162,712
Number of Sequences: 5004
Number of extensions: 42041
Number of successful extensions: 108
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 248115846
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)