Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0007_J22
         (578 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0334 - 2642998-2643063,2643125-2643169,2643552-2643617,264...    28   4.7  
08_01_0963 - 9661699-9661760,9662095-9662818,9662860-9663265,966...    27   8.2  
06_03_0339 - 19687749-19690805                                         27   8.2  

>05_01_0334 - 2642998-2643063,2643125-2643169,2643552-2643617,
            2643625-2643730,2643770-2644349,2645780-2645871,
            2645969-2646035,2646126-2646231,2646628-2646708,
            2646789-2647058,2647158-2648788,2648834-2649385,
            2650602-2651324,2651451-2651526
          Length = 1486

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 12/42 (28%), Positives = 18/42 (42%)
 Frame = +3

Query: 168  ILPTKNRMRSSWVSGYAAARTLKTNGTCYLMYLCARAVTDSY 293
            ++P   R+  S V GYA    +  NG    +  CA  +   Y
Sbjct: 1267 VVPALKRIERSKVVGYATCSVVAENGNSLYLLTCAHTIDHVY 1308


>08_01_0963 -
           9661699-9661760,9662095-9662818,9662860-9663265,
           9663488-9665037
          Length = 913

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = -3

Query: 294 YKNLLPPLHISTLNSMCRLFSVSGQRRTHL 205
           Y+NLL P H    N MCR+  +  Q   HL
Sbjct: 435 YRNLLQPEHTYFNNIMCRVHDLLRQLAWHL 464


>06_03_0339 - 19687749-19690805
          Length = 1018

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 10/28 (35%), Positives = 19/28 (67%)
 Frame = +2

Query: 170 TANKKQNEVQLGKWVRRCPDTENKRHML 253
           T + K NE+Q+ +W+  CP +E +R ++
Sbjct: 834 TVDVKNNELQV-RWLDACPQSEEERRLV 860


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,971,317
Number of Sequences: 37544
Number of extensions: 234720
Number of successful extensions: 476
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 469
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 476
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1352600424
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)