Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0007_J21
(354 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0219 + 15822050-15824896 29 0.79
11_06_0181 + 20985960-20987825,20987904-20989169 28 1.8
11_06_0153 - 20693663-20693689,20693808-20694096,20694493-206948... 28 2.4
03_05_0517 - 25118232-25118730,25119002-25119273 27 3.2
12_02_0216 + 15804110-15804284,15804341-15804351 27 5.6
11_04_0233 + 15168851-15170263 27 5.6
04_01_0279 + 3743025-3745169 27 5.6
12_01_0014 + 105422-105520,105598-105725,105939-106101,106198-10... 26 7.4
07_01_0601 + 4464745-4465010,4465274-4466582 26 7.4
02_05_0005 - 24890239-24891419,24891524-24891694,24891810-24892704 26 7.4
01_07_0009 - 40397276-40397534,40397637-40398745,40398834-403989... 26 7.4
12_01_1022 - 10435409-10435564,10435950-10436219,10436820-104371... 26 9.8
04_01_0072 - 784922-785567,785673-786406 26 9.8
>12_02_0219 + 15822050-15824896
Length = 948
Score = 29.5 bits (63), Expect = 0.79
Identities = 13/38 (34%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Frame = +1
Query: 1 DNSDTIRQ*KLSC-FSSSPYWPWLPQTEFTWWTIVVSI 111
D D +R+ ++ C F+ P WPWL ++ T+V+S+
Sbjct: 269 DFGDPLRKHEMHCRFTQGPPWPWLAVAS-SYGTLVISL 305
>11_06_0181 + 20985960-20987825,20987904-20989169
Length = 1043
Score = 28.3 bits (60), Expect = 1.8
Identities = 16/56 (28%), Positives = 25/56 (44%)
Frame = +2
Query: 35 RVFLLRRIGHGCRKQSSRGGQ*WCPSDGNSDHVVIANPDPFFSQPSNGPSGNYEPI 202
++++ HG R + CPSD +S + I N D + P N +G PI
Sbjct: 313 KLYVTSDSSHGMNSNIKRQRKYTCPSDSDSSNEQICNDD--VAVPDNQSTGQNVPI 366
>11_06_0153 -
20693663-20693689,20693808-20694096,20694493-20694829,
20695304-20696516,20700247-20700744
Length = 787
Score = 27.9 bits (59), Expect = 2.4
Identities = 16/56 (28%), Positives = 25/56 (44%)
Frame = +2
Query: 35 RVFLLRRIGHGCRKQSSRGGQ*WCPSDGNSDHVVIANPDPFFSQPSNGPSGNYEPI 202
++++ HG R + CPSD +S + I N D + P N +G PI
Sbjct: 306 KLYVTSDSSHGMNSNIKRQRKYICPSDSDSSNEQICNDD--VAVPDNQSTGQNVPI 359
>03_05_0517 - 25118232-25118730,25119002-25119273
Length = 256
Score = 27.5 bits (58), Expect = 3.2
Identities = 12/33 (36%), Positives = 14/33 (42%)
Frame = +2
Query: 149 DPFFSQPSNGPSGNYEPISTGPAFVDFNHPNYP 247
D FF++ P GN T P VD P P
Sbjct: 37 DWFFTRKGESPQGNISKEETAPTGVDVTDPGRP 69
>12_02_0216 + 15804110-15804284,15804341-15804351
Length = 61
Score = 26.6 bits (56), Expect = 5.6
Identities = 13/38 (34%), Positives = 17/38 (44%)
Frame = +2
Query: 107 PSDGNSDHVVIANPDPFFSQPSNGPSGNYEPISTGPAF 220
P+ +H V FF+ SN SGNY + G F
Sbjct: 15 PAPPYKNHTVAGADGWFFNATSNTTSGNYSDWAAGETF 52
>11_04_0233 + 15168851-15170263
Length = 470
Score = 26.6 bits (56), Expect = 5.6
Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
Frame = -2
Query: 335 IITSPSFQIADLYETFTSHHGREGR--RIARVDNWDD 231
+ T P++Q AD FTS HG R+A D D
Sbjct: 188 LATVPTYQAADFTYVFTSFHGMPSAYDRVAACDKASD 224
>04_01_0279 + 3743025-3745169
Length = 714
Score = 26.6 bits (56), Expect = 5.6
Identities = 13/34 (38%), Positives = 22/34 (64%), Gaps = 3/34 (8%)
Frame = -2
Query: 347 IIRLIITSPSFQIADLYETFTSHH---GREGRRI 255
+++L++ P++Q+AD TFT H G E RR+
Sbjct: 43 VLKLVVW-PAYQLADFVATFTIGHLSVGHERRRL 75
>12_01_0014 +
105422-105520,105598-105725,105939-106101,106198-106310,
106787-106825,107026-107109,107193-107241,107331-107422,
107680-107809,107906-107982,108058-109676,110024-110221,
110287-110825
Length = 1109
Score = 26.2 bits (55), Expect = 7.4
Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 6/39 (15%)
Frame = +2
Query: 152 PFFSQPSNGPSG------NYEPISTGPAFVDFNHPNYPP 250
P FS P+ P+G ++E ++ P F N PN PP
Sbjct: 875 PGFSAPARVPTGFSSGFSSHEGLNPPPGFSSHNGPNPPP 913
>07_01_0601 + 4464745-4465010,4465274-4466582
Length = 524
Score = 26.2 bits (55), Expect = 7.4
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +2
Query: 122 SDHVVIANPDPFFSQPSNGPSGNYEPISTGPA 217
SDH V+ P PF P++ + + PI T PA
Sbjct: 50 SDHFVLT-PPPFQITPTSIQNSTWLPIPTSPA 80
>02_05_0005 - 24890239-24891419,24891524-24891694,24891810-24892704
Length = 748
Score = 26.2 bits (55), Expect = 7.4
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = -3
Query: 280 TTGERVVVSLGWIIGMIEIDERRSSAYGFIISAR 179
+TG +V + L W++G E R +A G++ +R
Sbjct: 233 STGGKVPLVLDWVVGKKTCREARRNATGYMCVSR 266
>01_07_0009 -
40397276-40397534,40397637-40398745,40398834-40398932,
40399043-40399272,40399534-40399585,40399679-40399865,
40399987-40400193,40400283-40400449,40400804-40401094,
40401166-40401636
Length = 1023
Score = 26.2 bits (55), Expect = 7.4
Identities = 12/35 (34%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = +1
Query: 10 DTIRQ*KLSC-FSSSPYWPWLPQTEFTWWTIVVSI 111
D R+ ++ C F P WPWL T ++ T+V+++
Sbjct: 369 DPSRKHEMHCRFEKKPPWPWLAITS-SFGTLVIAL 402
>12_01_1022 -
10435409-10435564,10435950-10436219,10436820-10437125,
10437932-10438057,10439825-10439893,10440443-10440487,
10440717-10440776,10441527-10441589,10442186-10442266,
10442494-10442916
Length = 532
Score = 25.8 bits (54), Expect = 9.8
Identities = 17/45 (37%), Positives = 18/45 (40%), Gaps = 1/45 (2%)
Frame = +2
Query: 119 NSDHVVIANPDPFFSQPSNGPSGNYEPIS-TGPAFVDFNHPNYPP 250
N HV P P +S P G Y P G V N P YPP
Sbjct: 357 NEHHVPFIAPSPSYSAGMLPPQGMYPPPEWNGYHQVPLN-PYYPP 400
>04_01_0072 - 784922-785567,785673-786406
Length = 459
Score = 25.8 bits (54), Expect = 9.8
Identities = 11/26 (42%), Positives = 16/26 (61%), Gaps = 2/26 (7%)
Frame = +2
Query: 155 FFSQPSNGP--SGNYEPISTGPAFVD 226
FFS+PS GP SGN++ + +D
Sbjct: 66 FFSRPSKGPTVSGNFDYLPCSSCIID 91
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,728,749
Number of Sequences: 37544
Number of extensions: 208713
Number of successful extensions: 489
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 482
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 489
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 530315984
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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