Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0007_J20
         (570 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3E7.02c |hsp16||heat shock protein Hsp16|Schizosaccharomyces...    34   0.017
SPBC317.01 |mbx2|pvg4|MADS-box transcription factor Pvg4|Schizos...    29   0.36 
SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|...    29   0.63 
SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces pom...    28   1.1  
SPBC19F8.03c |||clathrin binding protein|Schizosaccharomyces pom...    26   3.4  
SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces pomb...    26   3.4  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    25   5.9  
SPAC4F8.15 |itr1|SPAC7D4.01|myo-inositol transporter Itr1|Schizo...    25   5.9  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    25   5.9  

>SPBC3E7.02c |hsp16||heat shock protein Hsp16|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 143

 Score = 33.9 bits (74), Expect = 0.017
 Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
 Frame = +2

Query: 14  ELDAHINTICLPDAGEVFDDSKNCVANG---WGKNRFGKDDEFAVVLKKIELDMVEHSRC 184
           ++  H ++  L  +GEV ++ KN    G   W + RFG       +  KI+ D +E +  
Sbjct: 61  DVQVHYDSGKLTISGEVVNERKNESTEGNQRWSERRFGSFSRTITIPAKIDADRIEANFS 120

Query: 185 NDLLRYT 205
           N LL  T
Sbjct: 121 NGLLTVT 127


>SPBC317.01 |mbx2|pvg4|MADS-box transcription factor
           Pvg4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 372

 Score = 29.5 bits (63), Expect = 0.36
 Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 5/54 (9%)
 Frame = -2

Query: 188 HYNGYAPPY----PVQSSLVLPQIHH-PYRNDSSPSRWRHSFYYHRRLRPRQAS 42
           H N Y PPY    PV     +P  HH PY +D+     R   ++     P++A+
Sbjct: 185 HNNNYPPPYCFQSPVSPGATVPLQHHSPYPSDNGFPGHRRQTHFAPYYYPQRAT 238


>SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 732

 Score = 28.7 bits (61), Expect = 0.63
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = +3

Query: 456 LSIPFKCIFSILAIISFITTY 518
           +SIPF  IF I A +SF T Y
Sbjct: 75  MSIPFYLIFGIFAFVSFTTQY 95


>SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 910

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 27/80 (33%), Positives = 39/80 (48%)
 Frame = +2

Query: 2   ALPLELDAHINTICLPDAGEVFDDSKNCVANGWGKNRFGKDDEFAVVLKKIELDMVEHSR 181
           A+P ELD+ + TI L +    F      V   +  + F + +E   ++KKI L  V  SR
Sbjct: 10  AIPKELDSPVTTIALYNNHLYFGTEGGDVFL-YNFSNF-QLNESPELVKKISL--VSKSR 65

Query: 182 CNDLLRYTELGARYNLHSSF 241
            N +L    LGA +  H SF
Sbjct: 66  VNRILAMPFLGAVFIHHGSF 85


>SPBC19F8.03c |||clathrin binding protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 649

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -1

Query: 312 MGQASGPPPSPVHMSFPSSPP 250
           M  + GP PSP H+ +P   P
Sbjct: 560 MEDSRGPLPSPAHIMYPEGSP 580


>SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1283

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = -3

Query: 346 DETSQLVPVIADGTSQWTTAITRAHVFS 263
           +E SQ   + +DG S++T+ +   H FS
Sbjct: 38  NECSQYTTIYSDGPSEYTSTLPYTHSFS 65


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 15/38 (39%), Positives = 19/38 (50%)
 Frame = -2

Query: 191  DHYNGYAPPYPVQSSLVLPQIHHPYRNDSSPSRWRHSF 78
            D  N +APP PVQ    +P  +      S+P R R SF
Sbjct: 1371 DSSNVHAPPPPVQPMNAMPSHNAVNARPSAPER-RDSF 1407


>SPAC4F8.15 |itr1|SPAC7D4.01|myo-inositol transporter
           Itr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 575

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +1

Query: 271 HVHG*WRWSTGLS 309
           HVH  WRW  GL+
Sbjct: 241 HVHNGWRWMVGLA 253


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = -3

Query: 376 VLLTAADAASDETSQLVPVIADGTSQWTTAITRAHVFSLLPS 251
           V +T+    +D TS   P+I + TS  ++A T     S LPS
Sbjct: 70  VEITSTSCTTD-TSASTPIITESTSSTSSASTTGSSSSPLPS 110


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,224,892
Number of Sequences: 5004
Number of extensions: 44759
Number of successful extensions: 156
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 242064240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)