Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0007_J19
         (157 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual           25   1.3  
SPCC576.04 |||bax inhibitor-like protein|Schizosaccharomyces pom...    25   1.8  
SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb...    24   2.4  
SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    23   4.1  
SPAC4C5.04 |rad31|uba4|SUMO E1-like activator enzyme Rad31|Schiz...    23   5.4  
SPAC343.15 |||tRNA isopentenyltransferase|Schizosaccharomyces po...    23   7.2  
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ...    22   9.5  

>SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1097

 Score = 25.0 bits (52), Expect = 1.3
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +3

Query: 78  NVYYYINDFNFDDTH 122
           N YY I D++FD  H
Sbjct: 917 NAYYIITDYDFDGNH 931


>SPCC576.04 |||bax inhibitor-like protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 266

 Score = 24.6 bits (51), Expect = 1.8
 Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = +3

Query: 21  MREEYMILDRQLRLWILTGNVYYYINDFNF-DDTHFWIL 134
           +R+ Y IL  QL +  L G ++Y    F+F    H W L
Sbjct: 59  LRKVYAILTAQLFVTSLFGGIFYLHPAFSFWVQMHPWFL 97


>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1919

 Score = 24.2 bits (50), Expect = 2.4
 Identities = 7/22 (31%), Positives = 13/22 (59%)
 Frame = +3

Query: 66   ILTGNVYYYINDFNFDDTHFWI 131
            +L   +Y ++ND+   D H W+
Sbjct: 1139 LLKNILYIWLNDYKDSDIHSWV 1160


>SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1096

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = -1

Query: 82  TFPVKIHNLNCLSNIIY 32
           T P  IHN  CLS  ++
Sbjct: 463 TSPESIHNAGCLSTFVF 479


>SPAC4C5.04 |rad31|uba4|SUMO E1-like activator enzyme
          Rad31|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 307

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +3

Query: 27 EEYMILDRQLRLW 65
          EE  + DRQ+RLW
Sbjct: 9  EEIALYDRQIRLW 21


>SPAC343.15 |||tRNA isopentenyltransferase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 434

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = +3

Query: 51  QLRLWILTGNVYYYINDFNFDDT 119
           Q ++ I+ G  +YY+    F+DT
Sbjct: 91  QGKIPIVVGGTHYYLQSLLFEDT 113


>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
           Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1955

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 7/32 (21%), Positives = 16/32 (50%)
 Frame = +3

Query: 12  YITMREEYMILDRQLRLWILTGNVYYYINDFN 107
           Y   R  + ++    R+W++   +++Y   FN
Sbjct: 503 YYESRSWFHLITNFNRIWVIHFGMFWYFTAFN 534


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 672,458
Number of Sequences: 5004
Number of extensions: 9543
Number of successful extensions: 21
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 2,362,478
effective HSP length: 32
effective length of database: 2,202,350
effective search space used: 41844650
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)