Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0007_J19
         (157 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0114 - 851249-852372,852577-852740,852838-853568                 29   0.39 
02_05_0540 + 29852109-29852195,29852304-29852477,29852585-298528...    27   2.1  
04_01_0452 - 5859262-5859465,5859618-5859661,5859753-5859954,586...    26   4.8  
01_01_0094 - 730484-731570,732030-732715                               26   4.8  
01_01_0092 + 722744-723459,723542-723711,723792-724885                 26   4.8  
01_05_0108 + 18183250-18183336,18183451-18183962,18184074-181842...    25   8.3  

>01_01_0114 - 851249-852372,852577-852740,852838-853568
          Length = 672

 Score = 29.5 bits (63), Expect = 0.39
 Identities = 10/36 (27%), Positives = 19/36 (52%)
 Frame = +3

Query: 27  EEYMILDRQLRLWILTGNVYYYINDFNFDDTHFWIL 134
           + Y ++       IL  N  Y++N+ N+D   FW++
Sbjct: 64  KSYELVCSDTNATILIDNATYHVNEINYDYRRFWVV 99


>02_05_0540 +
           29852109-29852195,29852304-29852477,29852585-29852841,
           29852954-29853125,29853513-29853551,29853647-29853715,
           29853795-29853911,29854190-29854401,29854578-29854736,
           29854810-29855009,29855100-29855266,29855346-29855442,
           29855560-29855651,29855861-29856139
          Length = 706

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +3

Query: 45  DRQLRLWILTGNVYYYINDFNFDDTHFWIL 134
           +R  R+WI +  V  Y+N+   D  H W+L
Sbjct: 403 ERSFRMWINSLGVDSYVNNVFEDVRHGWVL 432


>04_01_0452 -
           5859262-5859465,5859618-5859661,5859753-5859954,
           5860905-5860949
          Length = 164

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = -1

Query: 82  TFPVKIHNLNCLSNIIYSSRIVI 14
           +F   ++N+N LSN++Y  R+ I
Sbjct: 50  SFSRTVYNINTLSNLVYVGRVQI 72


>01_01_0094 - 730484-731570,732030-732715
          Length = 590

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 6/16 (37%), Positives = 12/16 (75%)
 Frame = +3

Query: 87  YYINDFNFDDTHFWIL 134
           YY+   N++D+ FW++
Sbjct: 70  YYVTSINYNDSSFWVV 85


>01_01_0092 + 722744-723459,723542-723711,723792-724885
          Length = 659

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 9/36 (25%), Positives = 20/36 (55%)
 Frame = +3

Query: 27  EEYMILDRQLRLWILTGNVYYYINDFNFDDTHFWIL 134
           E Y ++ R  R  I      Y++ D +++++ FW++
Sbjct: 67  EAYELVCRDGRAIIHINTGKYFVKDISYNESRFWVV 102


>01_05_0108 +
           18183250-18183336,18183451-18183962,18184074-18184245,
           18184984-18185022,18185117-18185185,18185281-18185397,
           18185842-18186056,18187085-18187240,18187328-18187527,
           18187927-18188084,18188321-18188417,18188738-18188829,
           18189018-18189191
          Length = 695

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +3

Query: 45  DRQLRLWILTGNVYYYINDFNFDDTHFWIL 134
           +R  RLWI +  +  YIN+   D  + W+L
Sbjct: 430 ERSFRLWINSLGISTYINNVFEDLRNGWVL 459


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,797,094
Number of Sequences: 37544
Number of extensions: 47466
Number of successful extensions: 97
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 14,793,348
effective HSP length: 32
effective length of database: 13,591,940
effective search space used: 258246860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)