Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0007_J18
(631 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC777.15 |||tRNA dihydrouridine synthase Dus4 |Schizosaccharom... 31 0.18
SPAC821.04c |cid13||poly|Schizosaccharomyces pombe|chr 1|||Manual 30 0.32
SPAC19B12.02c |||1,3-beta-glucanosyltransferase|Schizosaccharomy... 28 0.97
SPAC25B8.16 |||RNase P and RNase MRP subunit |Schizosaccharomyce... 28 1.3
SPCC1620.08 |||succinate-CoA ligase |Schizosaccharomyces pombe|c... 27 1.7
SPAC22H10.03c |kap114||karyopherin Kap14|Schizosaccharomyces pom... 27 2.2
SPCC1672.10 |mis16||kinetochore protein Mis16 |Schizosaccharomyc... 26 3.9
SPAC1783.07c |pap1|caf3, caf3|transcription factor Caf3|Schizosa... 25 6.8
SPAC18B11.05 |gpi18||pig-V|Schizosaccharomyces pombe|chr 1|||Manual 25 6.8
SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase E3|Schizosac... 25 6.8
SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces... 25 9.0
SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces pom... 25 9.0
SPAC2C4.05 |||cornichon family protein|Schizosaccharomyces pombe... 25 9.0
SPAC19D5.07 |uga1||4-aminobutyrate aminotransferase |Schizosacch... 25 9.0
>SPCC777.15 |||tRNA dihydrouridine synthase Dus4
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 326
Score = 30.7 bits (66), Expect = 0.18
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = +2
Query: 335 YYLHDYSLNAHYYYHHLT 388
+Y YSLN H +YHHLT
Sbjct: 258 WYSTSYSLNFHLFYHHLT 275
>SPAC821.04c |cid13||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 578
Score = 29.9 bits (64), Expect = 0.32
Identities = 16/34 (47%), Positives = 19/34 (55%)
Frame = -3
Query: 578 YDTCIQNCSLRLRRYH*VHRFHQIH*KVFPYSNV 477
YD+ I N S RRY V + QI K FPY N+
Sbjct: 59 YDSIILNDSGLERRYAFVQKLEQILKKEFPYKNI 92
>SPAC19B12.02c |||1,3-beta-glucanosyltransferase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 542
Score = 28.3 bits (60), Expect = 0.97
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -3
Query: 263 ICKWKDSTRSCVIRELQSFGQYAKFHRY 180
+C+ DSTRSCVI + S Y+ Y
Sbjct: 366 VCECMDSTRSCVINDDVSSDDYSDLFSY 393
>SPAC25B8.16 |||RNase P and RNase MRP subunit |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 698
Score = 27.9 bits (59), Expect = 1.3
Identities = 13/42 (30%), Positives = 19/42 (45%)
Frame = +1
Query: 370 LLSSSDLQQVARRRCSSSIKRETWRMVLVRTQTTCNTLLYGK 495
L+ LQ AR C S + W+ ++ + T LLY K
Sbjct: 594 LVQRGSLQDRARIYCLSDDELSKWKTIIYKENLTAENLLYPK 635
>SPCC1620.08 |||succinate-CoA ligase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 433
Score = 27.5 bits (58), Expect = 1.7
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 4/53 (7%)
Frame = +1
Query: 286 VEYYCLALPLPKRFYVLLLT*LQFKCPLLLSSS----DLQQVARRRCSSSIKR 432
V Y C + K +Y +L + +CP++++S D++ VA S+ IKR
Sbjct: 124 VVYVCERKFIRKEYYFAILMDRENQCPMIVASDQGGVDIETVAAENPSAIIKR 176
>SPAC22H10.03c |kap114||karyopherin Kap14|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 986
Score = 27.1 bits (57), Expect = 2.2
Identities = 9/27 (33%), Positives = 17/27 (62%)
Frame = +2
Query: 134 GYAIPPIYEVLPEYFNNGEILHTAQRI 214
GY +PP+Y++ + + E+L +Q I
Sbjct: 666 GYVLPPVYKITQIHSGDTELLQLSQEI 692
>SPCC1672.10 |mis16||kinetochore protein Mis16 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 430
Score = 26.2 bits (55), Expect = 3.9
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Frame = -3
Query: 263 ICKWKDSTRSCVIRELQSFGQYAKFHRY*NI--PVKPHILEE*RNLLSQNDEC 111
IC W T+S E + AK+HR+ +I V+ H E L S +D+C
Sbjct: 207 ICLWDVQTQSFTSSETKVISPIAKYHRHTDIVNDVQFHPQHE-ALLASVSDDC 258
>SPAC1783.07c |pap1|caf3, caf3|transcription factor
Caf3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 552
Score = 25.4 bits (53), Expect = 6.8
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = +1
Query: 202 CPKDWSSRITHDRVLSFHL 258
CPK WS I H R SF +
Sbjct: 501 CPKVWSKIINHPRFESFDI 519
>SPAC18B11.05 |gpi18||pig-V|Schizosaccharomyces pombe|chr 1|||Manual
Length = 426
Score = 25.4 bits (53), Expect = 6.8
Identities = 8/22 (36%), Positives = 13/22 (59%)
Frame = +2
Query: 239 EYYPSTYKWDNSVVIRSNTTVW 304
+ YP+ + W + +IRSN W
Sbjct: 205 QQYPAAFLWSLATLIRSNGIFW 226
>SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase
E3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 905
Score = 25.4 bits (53), Expect = 6.8
Identities = 29/121 (23%), Positives = 53/121 (43%), Gaps = 7/121 (5%)
Frame = +2
Query: 158 EVLPEYFN--NGEILHTAQRIGVHGSRMIEYYPSTYKWDNSVVIRSNTTVWHYHCQSASM 331
EV+P FN N I +++ S ++D S + N+ C S+ +
Sbjct: 325 EVIPFSFNPYNDLIFSFKEKLYPLNSSPFNTLSDVPQFDVSEFVDENSFDSSSSC-SSKV 383
Query: 332 SYYLHDYSLNAHYYYHH--LTYNKWLGGDVVPLLKERRGEWYWF---VHKQLVTRYYMER 496
+ S+N+ H L+YN+ LG D+ + +R + Y F + +LV+ Y++
Sbjct: 384 FLTTRNNSINSEDSAHEVLLSYNRVLGSDIQGTILDRVKKGYQFDSQKNSELVSDLYLKD 443
Query: 497 L 499
L
Sbjct: 444 L 444
>SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 967
Score = 25.0 bits (52), Expect = 9.0
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = -3
Query: 413 HRLLATCCKSDDDNNSGHLNCNHV 342
H L+ K+DDD ++ HL +H+
Sbjct: 800 HALMRYLGKTDDDEDNSHLLVHHI 823
>SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1158
Score = 25.0 bits (52), Expect = 9.0
Identities = 7/15 (46%), Positives = 11/15 (73%)
Frame = -1
Query: 490 HIVTCYKLFVYEPVP 446
H+++CYK +EP P
Sbjct: 594 HVLSCYKTLFFEPPP 608
>SPAC2C4.05 |||cornichon family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 134
Score = 25.0 bits (52), Expect = 9.0
Identities = 9/30 (30%), Positives = 18/30 (60%)
Frame = -1
Query: 547 VYDVTTKFTDFTKSIRKSFHIVTCYKLFVY 458
++D TT F D + ++SF + C+ +F +
Sbjct: 92 MHDSTTIFKDVSSRQKRSFFKLACFAVFFF 121
>SPAC19D5.07 |uga1||4-aminobutyrate aminotransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 474
Score = 25.0 bits (52), Expect = 9.0
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +2
Query: 317 QSASMSYYLHDYSLNAHYYYHHLTYNKWLG 406
Q+A + Y HD +L H Y H +N W+G
Sbjct: 336 QAAGIFY--HDLALRPHAYQH---FNTWMG 360
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,769,273
Number of Sequences: 5004
Number of extensions: 59846
Number of successful extensions: 164
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 279695522
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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