Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0007_J18
         (631 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0112 + 5689439-5689474,5689629-5689778,5690194-5690361,569...    31   0.75 
04_04_1360 + 32889597-32890343                                         30   1.7  
08_02_0754 - 20810449-20810517,20810965-20811036,20811145-208112...    28   7.0  
02_04_0364 + 22374735-22374749,22374903-22375076,22377858-223779...    28   7.0  
02_01_0783 + 5835517-5835861,5835989-5836060,5836140-5836220,583...    27   9.3  

>03_02_0112 +
           5689439-5689474,5689629-5689778,5690194-5690361,
           5691334-5691458,5691914-5692007,5692844-5692942,
           5693730-5693910,5694051-5694166,5694758-5694913,
           5695226-5695354,5695554-5695718
          Length = 472

 Score = 31.1 bits (67), Expect = 0.75
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = +2

Query: 26  DYDTFYKTTVYMKDRVNQDLYIYVLSTLHIHRSDLEG 136
           +YD F +TT    + V  D Y  VL +  I+R+D EG
Sbjct: 16  EYDKFIRTTDRKHEAVVNDFYSRVLDSGDIYRADYEG 52


>04_04_1360 + 32889597-32890343
          Length = 248

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
 Frame = +2

Query: 185 GEILHTAQRIGVHGSRMIEYYPSTYKWDNSVVIRSN--TTVWHYHCQSASM 331
           G  L  A+R G H          ++ WD+S+V+ S+  + V H+H + A++
Sbjct: 22  GRTLAVAERDGTHDPATGRALTGSWLWDSSLVLASHLASCVHHHHLRGATV 72


>08_02_0754 -
           20810449-20810517,20810965-20811036,20811145-20811252,
           20811326-20811378,20811401-20811514,20812833-20812962
          Length = 181

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 16/45 (35%), Positives = 27/45 (60%), Gaps = 3/45 (6%)
 Frame = +2

Query: 413 VVPLLKERRGEWY--WFVHKQLVTRYYMERLSNGFGEIGE-LSGN 538
           V+P + E  G  Y  WFV++ L+ +   E L+NGF  + + ++GN
Sbjct: 135 VLPNILELVGLGYSGWFVYRYLLFKENREELANGFDALKKRITGN 179


>02_04_0364 +
           22374735-22374749,22374903-22375076,22377858-22377935,
           22379270-22380407,22380507-22380901,22382230-22382416,
           22382872-22382942,22383705-22383755
          Length = 702

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +2

Query: 104 TLHIHRSDLEGYAIPPIYEVLPEYFNNGEILHTAQ 208
           T+ +  SD E  A P     LP+  NN  +L++ Q
Sbjct: 382 TMRVFESDFEAKAAPEFGNTLPKSSNNNSMLNSEQ 416


>02_01_0783 +
           5835517-5835861,5835989-5836060,5836140-5836220,
           5836293-5836490,5836576-5836647,5836803-5836889,
           5836986-5837084,5837191-5837274,5837351-5837437,
           5837578-5837649,5837912-5838025,5838127-5838214,
           5838293-5838388,5838507-5838694
          Length = 560

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 18/96 (18%), Positives = 37/96 (38%)
 Frame = +2

Query: 257 YKWDNSVVIRSNTTVWHYHCQSASMSYYLHDYSLNAHYYYHHLTYNKWLGGDVVPLLKER 436
           Y W ++++I+     W +H    S++ +L    L  H+      + + L      +    
Sbjct: 366 YPWIDAIMIQLRKWGWMHHLARHSVACFLTRGDLFIHWEKGRDVFERLLIDSDWAI---N 422

Query: 437 RGEWYWFVHKQLVTRYYMERLSNGFGEIGELSGNVV 544
            G W W        +Y+       FG+  + +GN +
Sbjct: 423 NGNWMWLSCSSFFYQYHRIYSPTSFGKKYDPNGNYI 458


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,195,614
Number of Sequences: 37544
Number of extensions: 357695
Number of successful extensions: 925
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 905
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 925
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1537558360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)