Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0007_J17
         (435 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces...    27   1.6  
SPBP23A10.14c |ell1||RNA polymerase II transcription elongation ...    26   2.9  
SPBC3E7.09 |||Sad1-UNC-like C-terminal|Schizosaccharomyces pombe...    25   6.7  
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy...    25   6.7  

>SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 576

 Score = 26.6 bits (56), Expect = 1.6
 Identities = 16/45 (35%), Positives = 24/45 (53%)
 Frame = -2

Query: 434 LAMAAANRVHVVDNSGVPSDGNSDHVVIANPDPFFSQPSNGPSGN 300
           +A   A+R+++  N  V  DG +  VVI  P   F+ P+N  S N
Sbjct: 391 VAALLASRLNL--NHSVTGDGEAKQVVITMPSTHFT-PANNSSAN 432


>SPBP23A10.14c |ell1||RNA polymerase II transcription elongation
           factor SpELL|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 533

 Score = 25.8 bits (54), Expect = 2.9
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = -3

Query: 325 NHQTVLAEIYEPISTGPAFVDFNHPNYP 242
           N + +  ++ +P S  P+F+D N P+ P
Sbjct: 304 NEKRIPPQLAQPTSHVPSFIDTNSPSMP 331


>SPBC3E7.09 |||Sad1-UNC-like C-terminal|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 659

 Score = 24.6 bits (51), Expect = 6.7
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = +2

Query: 371 CRPMEHHYCPPRELCLRQP 427
           C P   H+C    LCL+ P
Sbjct: 25  CSPQTSHWCKYPALCLKSP 43


>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 433

 Score = 24.6 bits (51), Expect = 6.7
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = +1

Query: 184 YLYETFTSHHGREGCRIAWVDNWD 255
           Y+Y++      +   R  WV+NWD
Sbjct: 55  YIYKSNPGMEIKNAIRNGWVENWD 78


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,514,012
Number of Sequences: 5004
Number of extensions: 26031
Number of successful extensions: 57
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 57
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 156095170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)