Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0007_J17
         (435 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0005 - 24890239-24891419,24891524-24891694,24891810-24892704     31   0.54 
06_03_0795 - 24683023-24683155,24685853-24686057,24686275-246864...    30   0.94 
03_02_0269 + 7001891-7002212,7003598-7004037                           28   2.9  
11_04_0321 - 16359390-16359539,16359674-16359746,16360448-163608...    27   5.0  
08_02_0770 - 21018701-21019216,21019246-21019364,21020516-21020675     27   6.6  
03_06_0599 + 34984869-34985319,34986581-34987563                       27   6.6  
09_02_0511 - 10079180-10079355,10079656-10079722,10080144-100801...    27   8.7  
03_02_0260 - 6924532-6924757,6925443-6925546,6925729-6926007,692...    27   8.7  

>02_05_0005 - 24890239-24891419,24891524-24891694,24891810-24892704
          Length = 748

 Score = 30.7 bits (66), Expect = 0.54
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = +2

Query: 209 TTGERVVVSLGWIIGMIEIDERRSSAYGFINFR*DRLMVERRKDPG 346
           +TG +V + L W++G     E R +A G++    D   V+ R  PG
Sbjct: 233 STGGKVPLVLDWVVGKKTCREARRNATGYMCVSRDSECVDSRNGPG 278


>06_03_0795 -
           24683023-24683155,24685853-24686057,24686275-24686443,
           24686590-24686775,24686916-24687124,24687197-24687362
          Length = 355

 Score = 29.9 bits (64), Expect = 0.94
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +2

Query: 365 HYCRPMEHHYCPPRELCLRQPW 430
           HYCR +E+ YC  + L  R+ W
Sbjct: 181 HYCRSIENWYCLSKTLAEREAW 202


>03_02_0269 + 7001891-7002212,7003598-7004037
          Length = 253

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +1

Query: 205 SHHGREGCRIAWVDNWDD*NRR 270
           + H R+  R+AW D W D +R+
Sbjct: 62  TEHARQRMRVAWADGWVDGSRK 83


>11_04_0321 -
           16359390-16359539,16359674-16359746,16360448-16360845,
           16360919-16362673,16362751-16362861,16363745-16363962,
           16364088-16364196
          Length = 937

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -3

Query: 247 YPPKRYDNPLARGGK 203
           YPPKRY NP+   G+
Sbjct: 859 YPPKRYSNPVGPAGR 873


>08_02_0770 - 21018701-21019216,21019246-21019364,21020516-21020675
          Length = 264

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 16/50 (32%), Positives = 26/50 (52%)
 Frame = -2

Query: 431 AMAAANRVHVVDNSGVPSDGNSDHVVIANPDPFFSQPSNGPSGNL*THKH 282
           A+   NR    D  G+  + +S  VVI++P    S+ ++ PS  L  H+H
Sbjct: 166 AIDGGNREEEEDEHGLAREESSSPVVISSP----SRCTSSPSSRLLNHEH 211


>03_06_0599 + 34984869-34985319,34986581-34987563
          Length = 477

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 16/48 (33%), Positives = 25/48 (52%)
 Frame = -2

Query: 428 MAAANRVHVVDNSGVPSDGNSDHVVIANPDPFFSQPSNGPSGNL*THK 285
           +A A   + V ++   SDG   + V+A  DP     S+G +G + THK
Sbjct: 232 LANAVAAYEVHHAASRSDGGRWYAVLAVGDPSAPTTSSGINGAVITHK 279


>09_02_0511 -
           10079180-10079355,10079656-10079722,10080144-10080181,
           10080255-10080336
          Length = 120

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -2

Query: 404 VVDNSGVPSDGNSDHVVIANPDPFFSQPSNG 312
           +++N+G  S GN   ++  N  PFF   SNG
Sbjct: 57  ILNNAGATSKGNYALILPVNEFPFFLVYSNG 87


>03_02_0260 -
           6924532-6924757,6925443-6925546,6925729-6926007,
           6926093-6926368,6926460-6926678,6926758-6926926,
           6927208-6927382,6927489-6927600,6929566-6929820
          Length = 604

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -2

Query: 404 VVDNSGVPSDGNSDHVVIANPDPFFSQP 321
           V++N  +P   N  HVV+ANP P    P
Sbjct: 248 VLENCQLPH-ANHGHVVLANPSPILFYP 274


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,985,955
Number of Sequences: 37544
Number of extensions: 177755
Number of successful extensions: 408
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 404
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 408
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 826450812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)