Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0007_J16
         (585 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1683.12 |||nicotinic acid plasma membrane transporter |Schiz...    37   0.002
SPBC1773.15 |||membrane transporter|Schizosaccharomyces pombe|ch...    29   0.50 
SPAPB1A11.02 |||esterase/lipase |Schizosaccharomyces pombe|chr 1...    29   0.66 
SPBC8D2.07c |sfc9||transcription factor TFIIIC complex subunit S...    28   0.87 
SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|...    27   2.7  
SPBPB10D8.01 |||cysteine transporter |Schizosaccharomyces pombe|...    27   2.7  
SPAC1952.01 ||SPAC1B3.19|Pig-U|Schizosaccharomyces pombe|chr 1||...    26   4.7  
SPCC24B10.16c |||sequence orphan|Schizosaccharomyces pombe|chr 3...    25   6.2  

>SPBC1683.12 |||nicotinic acid plasma membrane transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 482

 Score = 37.1 bits (82), Expect = 0.002
 Identities = 30/124 (24%), Positives = 52/124 (41%), Gaps = 1/124 (0%)
 Frame = +1

Query: 172 RVNM-SMAIVDMTDERKEEYFDWSHSVQSVILSSFFWGYVVLQVPAGELARKFGGKPXXX 348
           R N+ + A+V + ++ K + + +S +V     S F+  Y+  + P+  L +KFG  P   
Sbjct: 59  RANIGNAAVVGLKEDLKLQAYQYSAAV-----SVFYATYITAETPSVLLVKKFG--PHYY 111

Query: 349 XXXXXXXXXXXXXXXXXXXGGWQLVCTCRILQGFTQAFIYPCMHHLVSQWIPLEEKGLLT 528
                                W LV T R+L G  +   +PC+   +S     EE+G   
Sbjct: 112 LSAMIIGWSLVTIFTCFVRHYWSLVLT-RLLLGICEGGFFPCLSLYISMTYKREEQGKRL 170

Query: 529 TIVY 540
             +Y
Sbjct: 171 AYLY 174


>SPBC1773.15 |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 497

 Score = 29.1 bits (62), Expect = 0.50
 Identities = 21/98 (21%), Positives = 34/98 (34%)
 Frame = +1

Query: 265 SSFFWGYVVLQVPAGELARKFGGKPXXXXXXXXXXXXXXXXXXXXXXGGWQLVCTCRILQ 444
           +SF+ G++V  +P   L +KF   P                        +      R L 
Sbjct: 94  TSFYLGFMVFSLPLSTLLQKF---PLSKVTSAFIVAWGILMTLTCLVHSYASYIATRTLL 150

Query: 445 GFTQAFIYPCMHHLVSQWIPLEEKGLLTTIVYAGGQLG 558
           G  ++ I P     ++QW   EE+      + A   LG
Sbjct: 151 GILESVITPAFVLFIAQWYRKEEQFFRMAFLVAWNGLG 188


>SPAPB1A11.02 |||esterase/lipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 339

 Score = 28.7 bits (61), Expect = 0.66
 Identities = 13/24 (54%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
 Frame = -1

Query: 456 LREPLEYPTGAN*LPPS-YRCSKW 388
           L  PL YPTG   LPPS ++C  W
Sbjct: 250 LVNPLYYPTGHKDLPPSFFQCCGW 273


>SPBC8D2.07c |sfc9||transcription factor TFIIIC complex subunit Sfc9
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 673

 Score = 28.3 bits (60), Expect = 0.87
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = +3

Query: 393 WSIYRRVAISLHLSDTPRVHAGFYLPLYASSRQSVD 500
           WS+Y++ A+   L ++ R     Y+ LY  S+ S+D
Sbjct: 508 WSVYKQKALDATLLNSLRYRLTLYIMLYTLSQISLD 543


>SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 732

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 13/46 (28%), Positives = 22/46 (47%)
 Frame = -1

Query: 225 LLLSFISHVDYSHAHVDSHSKCQKHGHEQQKRLDMPNTQTTRSNIF 88
           L+++ +  + ++H H   H     H H     + +PNT T   NIF
Sbjct: 461 LVVNLVGILAFNHGHNHDHGSHHHHSHSNHS-MCLPNT-TNDINIF 504


>SPBPB10D8.01 |||cysteine transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 552

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 17/90 (18%), Positives = 31/90 (34%)
 Frame = +1

Query: 271 FFWGYVVLQVPAGELARKFGGKPXXXXXXXXXXXXXXXXXXXXXXGGWQLVCTCRILQGF 450
           F+ G+V+ Q+P   L ++F   P                        +  +   R   G 
Sbjct: 133 FYVGFVIGQIPGHMLLQRF---PVSKFVAASTALWTIIIFLHCAAYNFSGLMALRFFLGL 189

Query: 451 TQAFIYPCMHHLVSQWIPLEEKGLLTTIVY 540
            ++ + P M   +  + P  E+ LL    Y
Sbjct: 190 VESSLLPTMEATIGMFFPHSEQALLQPFFY 219


>SPAC1952.01 ||SPAC1B3.19|Pig-U|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 408

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
 Frame = +3

Query: 357 ISKFSDIVASSTWS---IYRRVAISLHLSDTPRVHAGFYL 467
           IS F     ++TW    +YRR+ +S  +S   RV  G YL
Sbjct: 15  ISFFLQWYLANTWIAEFLYRRIEVSTPVSGFLRVREGLYL 54


>SPCC24B10.16c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 110

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = +1

Query: 265 SSFFWGYVVLQVPAGELARKFGGK 336
           S F WG  V   PAG+LA    GK
Sbjct: 17  SIFVWGSNVSTCPAGDLALSMPGK 40


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,535,900
Number of Sequences: 5004
Number of extensions: 51980
Number of successful extensions: 146
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 252150250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)