Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0007_J15
         (602 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22F3.07c |atp20||F0-ATPase subunit G|Schizosaccharomyces pom...    27   2.8  
SPCC965.08c |alr1||alanine racemase Alr1|Schizosaccharomyces pom...    26   3.7  
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr...    26   3.7  
SPCC1223.09 |||uricase |Schizosaccharomyces pombe|chr 3|||Manual       25   6.4  
SPAC56F8.10 |met9|met5|methylenetetrahydrofolate reductase Met9|...    25   6.4  

>SPAC22F3.07c |atp20||F0-ATPase subunit G|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 118

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = -3

Query: 459 PLSQKPAYLFPPCSYWVCDSRELVISVQH 373
           PL QK + +  P  YW   S+ELV  V H
Sbjct: 36  PLIQKLSAVQQPIMYWANVSKELVQQVYH 64


>SPCC965.08c |alr1||alanine racemase Alr1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 375

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 22/70 (31%), Positives = 34/70 (48%)
 Frame = +3

Query: 96  NGIKSVLVGGTTGEHMSLAVSDRKKVITDWVKVSKTTGLHIQVQVGGAPLADVLDLAAYC 275
           NG+K+ +VG  + + +++ +SD    I D VK         +V   G P   V D+A YC
Sbjct: 305 NGVKAPIVGRVSMDMLTVDLSD----IPD-VKPGD------EVIFWGTPELTVADIAKYC 353

Query: 276 QDVGVDSLLT 305
            D     L+T
Sbjct: 354 SDTSPYELVT 363


>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1275

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 18/49 (36%), Positives = 24/49 (48%)
 Frame = +3

Query: 51   VNYGAIPSYAKFLADNGIKSVLVGGTTGEHMSLAVSDRKKVITDWVKVS 197
            + YG I   A+F    G  SVL+  +TG  +  A  D    I DW K+S
Sbjct: 928  IAYGDISCIAQFNDYEGHVSVLIATSTGIFLG-AFGDSSD-IRDWKKIS 974


>SPCC1223.09 |||uricase |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 296

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 10/37 (27%), Positives = 18/37 (48%)
 Frame = +3

Query: 339 AELVSYVELVANAAPKLPVLYYHIPSMSRVEINMPAF 449
           A +    + + N  P +  +YY +P+    EIN+  F
Sbjct: 231 ATMYKMADTIINTYPAINEVYYALPNKHYFEINLAPF 267


>SPAC56F8.10 |met9|met5|methylenetetrahydrofolate reductase
           Met9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 603

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +2

Query: 383 EITSSLLSHTQYEQGGNKYAGFCERGYSS 469
           EIT+S  S   Y + G+ +A +CE+  SS
Sbjct: 374 EITTSWGSPKSYSEIGDLFARYCEKKISS 402


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,468,295
Number of Sequences: 5004
Number of extensions: 51535
Number of successful extensions: 130
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 264253462
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)