Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0007_J15
         (602 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    27   0.19 
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   3.0  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    21   7.0  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   7.0  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   7.0  
AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    21   9.3  

>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 26.6 bits (56), Expect = 0.19
 Identities = 18/44 (40%), Positives = 28/44 (63%), Gaps = 5/44 (11%)
 Frame = +3

Query: 159 DRKKVITDWVKVSKTTGLHIQVQVG---GAPLADV--LDLAAYC 275
           D  + ITD +K  ++TGLH+Q++VG   GA +A +  L +  YC
Sbjct: 498 DMVEAITD-LK-DRSTGLHLQIRVGVHSGAVVAGIVGLKMPRYC 539


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -2

Query: 316 SSGSVNNESTPTSWQYAARSKTSASGAPPTCT 221
           SSGS NN+++  S +  + + +  S  PPT T
Sbjct: 610 SSGS-NNQTSSASRENTSNTTSMESFKPPTLT 640


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +3

Query: 282 VGVDSLLTLPELYFKPATVAELVSYVELV 368
           +GV SLLTL   + K       VSY++ V
Sbjct: 279 LGVTSLLTLSTQHAKSQASLPPVSYLKAV 307


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -2

Query: 292  STPTSWQYAARSKTSASGAPPTCT 221
            S+P+S   + R++  A G PP  T
Sbjct: 1483 SSPSSPVLSVRTQGQAPGIPPAAT 1506


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -2

Query: 292  STPTSWQYAARSKTSASGAPPTCT 221
            S+P+S   + R++  A G PP  T
Sbjct: 1479 SSPSSPVLSVRTQGQAPGIPPAAT 1502


>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
           releasing hormone-binding protein protein.
          Length = 332

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 18/74 (24%), Positives = 29/74 (39%)
 Frame = +3

Query: 132 GEHMSLAVSDRKKVITDWVKVSKTTGLHIQVQVGGAPLADVLDLAAYCQDVGVDSLLTLP 311
           G  +S  +S  +   T  ++    +  H QV +GG+   D   +       G+DS     
Sbjct: 233 GVGVSNFLSSTRTAETGTIRKCDESSPHDQVIIGGSNGLDTSKVHIIDSICGIDSKPDYR 292

Query: 312 ELYFKPATVAELVS 353
           EL     T   L+S
Sbjct: 293 ELTEYSVTSVRLIS 306


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 166,094
Number of Sequences: 438
Number of extensions: 3306
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17726685
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)