Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0007_J14
         (548 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein Pop1...    29   0.45 
SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein Ph...    26   3.2  
SPAC22F8.04 |||triose phosphate transporter |Schizosaccharomyces...    25   5.6  
SPCC188.02 |par1||protein phosphatase regulatory subunit Par1 |S...    25   7.3  
SPBC14F5.13c |||alkaline phosphatase |Schizosaccharomyces pombe|...    25   9.7  

>SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein
           Pop1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 775

 Score = 29.1 bits (62), Expect = 0.45
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = -2

Query: 328 FFPNSVASRLPTACLIYSAKRITLFK*VVTRNINIRE 218
           FF +S+ S++ T CL  S     + K V  R+ N+RE
Sbjct: 351 FFWDSIDSKIRTMCLEQSLSACAIMKRVYFRHFNLRE 387


>SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein
           Phf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 538

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 13/42 (30%), Positives = 24/42 (57%)
 Frame = -2

Query: 427 NIKQVVKQILWTIPAAINETPIDSIISGNFS*KFFPNSVASR 302
           N  ++V Q+L + PAA++ + I + I   +S +   NS  +R
Sbjct: 420 NEDEIVLQVLESFPAAVSFSTITNTIQAKYSNRKIKNSNITR 461


>SPAC22F8.04 |||triose phosphate transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 383

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 13/48 (27%), Positives = 25/48 (52%)
 Frame = +3

Query: 222 LMFMFLVTTYLNKVILLALYIKQAVGNLEATLFGKNFQLKLPEIILSM 365
           L   F V++ +   IL+ +  KQA+  + A L   +FQ+    +++ M
Sbjct: 87  LTIFFAVSSQIVFAILVTILNKQALNIINAPLLMLSFQMAFTSLMVKM 134


>SPCC188.02 |par1||protein phosphatase regulatory subunit Par1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 548

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 10/21 (47%), Positives = 16/21 (76%)
 Frame = +2

Query: 185 SNNYNIRRLPRFSDVYVSRYN 247
           S N N+ RLP F+DV V++++
Sbjct: 99  SENRNLVRLPSFTDVPVNKWH 119


>SPBC14F5.13c |||alkaline phosphatase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 532

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +2

Query: 224 DVYVSRYNLFK*SNSLSTI 280
           D+YV+R+N+F   N LS I
Sbjct: 424 DIYVARHNIFNLINVLSDI 442


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,093,079
Number of Sequences: 5004
Number of extensions: 40402
Number of successful extensions: 110
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)