Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0007_J13
         (585 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase Ogm4|Schizo...    26   3.5  
SPBC1604.17c |||conserved fungal protein|Schizosaccharomyces pom...    26   3.5  
SPBC12D12.05c |||mitochondrial carrier, calcium binding subfamil...    26   3.5  
SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15 |Sc...    26   4.7  
SPBC1709.06 |dus2||tRNA dihydrouridine synthase Dus2 |Schizosacc...    25   6.2  
SPBC13G1.08c |ash2||Ash2-trithorax family protein|Schizosaccharo...    25   6.2  
SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr 1|||M...    25   8.1  

>SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase
           Ogm4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 778

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = -3

Query: 583 LEFTPTFWRLNSPGQSGFRRVSSRERSGYGLSSQW 479
           L F   FW LN PG+  F  V   + + Y L  ++
Sbjct: 68  LSFITRFWNLNLPGEVVFDEVHFGKFASYYLQGKY 102


>SPBC1604.17c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 459

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +2

Query: 365 YVRLQYPRYHARVANSLKNLFTLLLKN 445
           Y+R     +H  +  +L+NLFTL+  N
Sbjct: 410 YMRCNLQEHHNAIVQALQNLFTLIKLN 436


>SPBC12D12.05c |||mitochondrial carrier, calcium binding
           subfamily|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 426

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = +3

Query: 471 KHGHWELSPYPDRSRDETL 527
           +HG+W+L P+P    D  +
Sbjct: 74  RHGYWKLHPHPHHQHDSII 92


>SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1063

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = -2

Query: 305  TPRPYSFPPTSITLHLTDLQYSLKASHIHSI 213
            TP+ +  PP++  L  TD + SL  S+I S+
Sbjct: 925  TPQSFFIPPSTPDLSFTDNKNSLSPSNILSL 955


>SPBC1709.06 |dus2||tRNA dihydrouridine synthase Dus2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 479

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 13/46 (28%), Positives = 25/46 (54%)
 Frame = -2

Query: 200 NFSTSFGFAASLLRISVSAAAMVAQL*YQLLSPYRLSL*APMRLLQ 63
           +FS   G  A LL+      +++  L  ++  PY++S+   +RLL+
Sbjct: 119 HFSVHAGMGAGLLKNQDRLVSILDALVNEIGKPYKISISCKIRLLE 164


>SPBC13G1.08c |ash2||Ash2-trithorax family
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 652

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 11/24 (45%), Positives = 12/24 (50%)
 Frame = -3

Query: 121 NTSCYLHTGFHYRHPCAFCSVCFN 50
           NT CY     + R P   CSVC N
Sbjct: 40  NTYCYCGKDRNLRFPDLQCSVCLN 63


>SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 468

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = +1

Query: 373 PAISEVSCARCQLFKKPFHAPFEEPQIPWYSLGNTAT 483
           PA +E   A C+   K FH P E       S GNT++
Sbjct: 280 PAFTEEILA-CENLLKVFHVPVESSTTNAVSTGNTSS 315


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,729,320
Number of Sequences: 5004
Number of extensions: 60834
Number of successful extensions: 163
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 252150250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)