Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0007_J13
(585 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0566 - 20531659-20531696,20533101-20534094 30 1.6
08_02_1091 + 24256025-24256190,24256806-24257978,24258066-242587... 29 2.1
08_02_0645 - 19666189-19666209,19666330-19666437,19667041-196671... 29 2.7
01_06_0459 + 29538025-29538579,29539190-29539354,29539448-295395... 29 2.7
08_01_0725 - 6480773-6481203,6481802-6482801 29 3.6
04_03_0191 - 12452369-12452499,12452875-12453077,12453641-124538... 29 3.6
07_03_1126 - 24166758-24166879,24166948-24167386,24167708-241678... 28 6.3
01_01_0323 + 2598850-2598924,2599756-2600844,2601352-2602589,260... 28 6.3
08_02_1009 - 23527880-23527884,23528437-23528728 27 8.3
02_05_0243 - 27124559-27124864,27126922-27126990,27127741-271279... 27 8.3
>12_02_0566 - 20531659-20531696,20533101-20534094
Length = 343
Score = 29.9 bits (64), Expect = 1.6
Identities = 16/57 (28%), Positives = 28/57 (49%)
Frame = +2
Query: 65 AEGAWVPIMKAGMEIATGIKVGPPSLPQRPISAEAKQRIQTKLRSLGLTK*NEYERL 235
A VP ++ +++ +K GPP+ EA ++T R LGL + + ER+
Sbjct: 62 ATNVQVPTVQQQCKLSEFLKTGPPTFAMAVDPMEASDWLRTVERKLGLIQCTDQERV 118
>08_02_1091 +
24256025-24256190,24256806-24257978,24258066-24258733,
24258994-24260065,24260241-24260563,24260647-24260835,
24261400-24261506,24262103-24262163,24262617-24262634
Length = 1258
Score = 29.5 bits (63), Expect = 2.1
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = -2
Query: 347 TISLPL*RHKNHPDTPRPYSFPPTSITLHLTDLQYSLKASHIHS 216
T S+ + + DTPR YSFP + +L L++ H+ S
Sbjct: 289 TDSVEILDQEEDTDTPREYSFPDKRVDENLKILEHQSSECHVRS 332
>08_02_0645 -
19666189-19666209,19666330-19666437,19667041-19667152,
19667321-19667417,19667809-19667911,19668071-19668152,
19668519-19668665,19668763-19668863,19669037-19669231
Length = 321
Score = 29.1 bits (62), Expect = 2.7
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -1
Query: 186 VWIRCFASADIGLCGSDGGPTLIPVA 109
+W RC A + + LCG GG L+ A
Sbjct: 1 MWSRCSAGSAVALCGGRGGHRLLSCA 26
>01_06_0459 +
29538025-29538579,29539190-29539354,29539448-29539585,
29539685-29539836,29539949-29540057,29540281-29540379,
29541051-29541116,29541208-29541315,29541428-29541553
Length = 505
Score = 29.1 bits (62), Expect = 2.7
Identities = 13/24 (54%), Positives = 17/24 (70%), Gaps = 2/24 (8%)
Frame = -3
Query: 484 QWPCFPGNT--REFGVLQKEREKV 419
Q+PCFP N RE GV+ +E E+V
Sbjct: 163 QYPCFPANALQRERGVILREMEEV 186
>08_01_0725 - 6480773-6481203,6481802-6482801
Length = 476
Score = 28.7 bits (61), Expect = 3.6
Identities = 15/57 (26%), Positives = 28/57 (49%)
Frame = +2
Query: 65 AEGAWVPIMKAGMEIATGIKVGPPSLPQRPISAEAKQRIQTKLRSLGLTK*NEYERL 235
A VP ++ +++ +K GPP+ EA ++T + LGL + + ER+
Sbjct: 18 ATNVQVPTVQQQCKLSEFLKTGPPTFAMAVDPMEASDWLRTVEKKLGLIQCTDQERV 74
>04_03_0191 -
12452369-12452499,12452875-12453077,12453641-12453835,
12454301-12454809
Length = 345
Score = 28.7 bits (61), Expect = 3.6
Identities = 11/33 (33%), Positives = 16/33 (48%)
Frame = +3
Query: 468 GKHGHWELSPYPDRSRDETLLKPDCPGLFSLQN 566
G+ G W ++P P+R R +P C F N
Sbjct: 146 GQRGRWRVAPEPERPRFRCRCRPRCDYAFGRGN 178
>07_03_1126 -
24166758-24166879,24166948-24167386,24167708-24167875,
24168388-24168675,24169468-24169575,24169759-24169811,
24170033-24170192,24170353-24170442,24170902-24170953,
24171156-24171283
Length = 535
Score = 27.9 bits (59), Expect = 6.3
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = -3
Query: 322 IKTIQTPLVHTPSPRRPLR 266
+K +T LVHTP+P PLR
Sbjct: 343 VKKSKTKLVHTPNPPSPLR 361
>01_01_0323 + 2598850-2598924,2599756-2600844,2601352-2602589,
2602637-2602810,2603032-2603098,2603735-2603757,
2603899-2604001,2604087-2604848,2605098-2605292,
2605496-2606115,2606429-2606480,2606558-2607197,
2608366-2608574,2608660-2609189,2609500-2609566,
2609651-2609728,2610415-2610483,2610569-2610643
Length = 2021
Score = 27.9 bits (59), Expect = 6.3
Identities = 15/46 (32%), Positives = 28/46 (60%)
Frame = +2
Query: 8 IAKARALQEKLSLAIEAHTAEGAWVPIMKAGMEIATGIKVGPPSLP 145
+AK +A Q K + ++++ +EG VP+ + + +TG+ V SLP
Sbjct: 1177 MAKMKAEQSKFAESMKSSGSEGQDVPMSEPDVSCSTGV-VSEESLP 1221
>08_02_1009 - 23527880-23527884,23528437-23528728
Length = 98
Score = 27.5 bits (58), Expect = 8.3
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +2
Query: 14 KARALQEKLSLAIEAHTAEGAWV 82
+ARA++ K+ LA EA EG W+
Sbjct: 10 EARAVEMKVGLAREARPMEGGWI 32
>02_05_0243 -
27124559-27124864,27126922-27126990,27127741-27127926,
27128572-27129093
Length = 360
Score = 27.5 bits (58), Expect = 8.3
Identities = 18/60 (30%), Positives = 31/60 (51%)
Frame = +2
Query: 389 YHARVANSLKNLFTLLLKNPKFPGIPWETRPLGAQSIPGSFTG*NSPETGLSGTI*PPKC 568
+H+R +++ + LF+ L++ G+PW R L S GS + E GL+G +C
Sbjct: 84 HHSRESSTGRLLFSDQLRSGAAAGVPW--RRLAQGSGAGSVGDDDDDEGGLAGAASQWRC 141
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,351,309
Number of Sequences: 37544
Number of extensions: 424474
Number of successful extensions: 1159
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1157
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1376330256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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