Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0007_J11
         (614 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC10F6.16 |mug134||endosulphine family protein|Schizosaccharom...    37   0.002
SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces...    31   0.17 
SPCC1235.05c |fft2||fun thirty related protein Fft2|Schizosaccha...    29   0.40 
SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase Abc...    29   0.71 
SPAC25A8.01c ||snf2SR|fun thirty related protein Fft3|Schizosacc...    29   0.71 
SPAC30D11.11 |||Haemolysin-III family protein|Schizosaccharomyce...    26   3.8  
SPMIT.03 |||mitochondrial DNA binding endonuclease|Schizosacchar...    25   8.7  
SPAC17A2.01 |bsu1|SPAC1B1.05, bsu1|high-affinity import carrier ...    25   8.7  

>SPAC10F6.16 |mug134||endosulphine family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 139

 Score = 37.1 bits (82), Expect = 0.002
 Identities = 25/72 (34%), Positives = 32/72 (44%)
 Frame = +2

Query: 281 GRGPAGHSAFLQKRLAKGQKFFDSGDYQMAKQRPGNXXXXXXXXXXXXXXXTGDAIPTPD 460
           GR P      +QK L +G+K+FDSGDY + K                     G  IP+PD
Sbjct: 42  GRLPQRKDLLVQK-LQQGRKYFDSGDYALNK---------AGKASDSGITCIGKEIPSPD 91

Query: 461 TVPIRKTSIIQP 496
           T+P R  S   P
Sbjct: 92  TIPHRVVSAGSP 103


>SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 897

 Score = 30.7 bits (66), Expect = 0.17
 Identities = 16/41 (39%), Positives = 22/41 (53%)
 Frame = -2

Query: 424 GWCSRCFKWSRKVTRSLFCHLIITRVEEFLPFG*PFLQKSR 302
           GWCS  F+  +K  R   C+  I      LPFG PF+++ R
Sbjct: 681 GWCSLVFEAYQKWNR---CYYSIFLNNNILPFGHPFVKECR 718


>SPCC1235.05c |fft2||fun thirty related protein
           Fft2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1284

 Score = 29.5 bits (63), Expect = 0.40
 Identities = 18/51 (35%), Positives = 24/51 (47%)
 Frame = +3

Query: 456 QTLSRFARLLSSNPSSPHRVRLPSCTSRHWSFNLAVXNISHFIFSYISSQR 608
           Q ++ FA LL      PH V +PS T  +W   LA    S  +  Y  SQ+
Sbjct: 584 QVVAFFALLLEQGHHGPHLVVVPSSTLENWLRELARFCPSLRVEPYYGSQQ 634


>SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase
           Abc2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1463

 Score = 28.7 bits (61), Expect = 0.71
 Identities = 11/28 (39%), Positives = 16/28 (57%), Gaps = 3/28 (10%)
 Frame = -2

Query: 220 WIIWR---FILVICFAHVVDCVKKNANI 146
           W IW     I+V+ F H+ DC K N ++
Sbjct: 47  WTIWLKSLVIMVLLFTHIYDCYKTNESV 74


>SPAC25A8.01c ||snf2SR|fun thirty related protein
           Fft3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 922

 Score = 28.7 bits (61), Expect = 0.71
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +3

Query: 456 QTLSRFARLLSSNPSSPHRVRLPSCTSRHW 545
           QT++ F+ L+  N + PH V  P+ T  +W
Sbjct: 421 QTIAFFSLLMDKNINGPHLVIAPASTMENW 450


>SPAC30D11.11 |||Haemolysin-III family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 442

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +3

Query: 87  WRKLTVAIITHLFNNIKHFIILAFFFTQSTT 179
           W   T  I THL   I  F +LA+F+  S++
Sbjct: 204 WHNETFNIWTHLSAFIVFFAVLAYFYPSSSS 234


>SPMIT.03 |||mitochondrial DNA binding
           endonuclease|Schizosaccharomyces pombe|chr
           mitochondrial||Partial|Manual
          Length = 323

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = -2

Query: 433 WQLGWCSRCFKWSRKVTRSLFCHLI 359
           W++   S CFK+S+K TR +F  ++
Sbjct: 15  WKILDKSFCFKYSKKNTRLVFIFIV 39


>SPAC17A2.01 |bsu1|SPAC1B1.05, bsu1|high-affinity import carrier for
           pyridoxine, pyridoxal, and pyridoxamine
           Bsu1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 526

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +2

Query: 134 KTFYYISVFLYTVHNMS 184
           K  Y+ S+F+YTV N+S
Sbjct: 147 KPVYFCSIFVYTVFNIS 163


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,362,415
Number of Sequences: 5004
Number of extensions: 43567
Number of successful extensions: 132
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 269634532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)