Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0007_J07
         (589 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    30   0.22 
SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase Lkh1|Schi...    28   0.88 
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    28   1.2  
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    27   2.7  
SPCC757.10 |vph2||endoplasmic reticulum membrane involved in ass...    27   2.7  
SPBC1826.01c |mot1||TATA-binding protein associated factor Mot1|...    26   4.7  
SPAC23D3.08 |usp108||U1 snRNP-associated protein Usp108|Schizosa...    25   6.2  
SPCC737.06c |||glutamate-cysteine ligase regulatory subunit |Sch...    25   6.2  
SPCC1450.04 |tef5||translation elongation factor EF-1 beta subun...    25   8.2  
SPBC16G5.14c |rps3||40S ribosomal protein S3|Schizosaccharomyces...    25   8.2  
SPAC4G8.07c |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual          25   8.2  
SPAC959.03c |||U3 snoRNP-associated protein Utp7|Schizosaccharom...    25   8.2  

>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 30.3 bits (65), Expect = 0.22
 Identities = 32/129 (24%), Positives = 56/129 (43%)
 Frame = -3

Query: 551  LTFFSAELSSELGAGCDRSLHTRVTGSRSPSGPHCSVAPSNFNSSGST*ASRSTFLWLGM 372
            +T   +E SS +G+G D +  +  T   S S    SVA S   +S S+ +S S+   +  
Sbjct: 905  VTSTGSETSSVVGSGTDSATSSSWTAETSSSAITSSVAASVTPTSSSSASSWSSSSEVDP 964

Query: 371  TTSDARPSPSERLFVPISTLYGVLGSTNASITCTSALSCNSGWLLCLFVLK*SNISVGIC 192
            +T+ +    S       S    V GS+ +S+   SA   ++  +    V   S  SV   
Sbjct: 965  STAASATGSSTSSIATAS----VSGSSTSSVATASATDSSTSSIAAASVTGSSTSSVATA 1020

Query: 191  NFCGTAMST 165
            +   ++ S+
Sbjct: 1021 SVTDSSTSS 1029


>SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase
           Lkh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 690

 Score = 28.3 bits (60), Expect = 0.88
 Identities = 17/55 (30%), Positives = 27/55 (49%)
 Frame = -3

Query: 446 SVAPSNFNSSGST*ASRSTFLWLGMTTSDARPSPSERLFVPISTLYGVLGSTNAS 282
           SV PS+ N+  +   S +  +WL MT    +P PS  ++ P S    V+   + S
Sbjct: 252 SVTPSSINNHTAVPLSPTLAVWLPMTQPTFQP-PSANVYQPASNANQVITPVSIS 305


>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 3971

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
 Frame = -3

Query: 539  SAELSSELGAGCDRSLHTRVTGSRSPS--GPHCS 444
            S+ LSS +G G   S +++VT ++ PS   PH S
Sbjct: 3657 SSSLSSSIGVGSSFSSNSKVTSNKVPSTVSPHSS 3690


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 26/87 (29%), Positives = 40/87 (45%), Gaps = 6/87 (6%)
 Frame = -3

Query: 482 VTGSRSPSGPHCSVAPSNFNSSGST*ASRSTFLWLGMTTSDARP---SPSERLF---VPI 321
           V+ +  PS     V+ S+ + S S   + STF  L  +TS ++P   S S   F    P 
Sbjct: 144 VSSAILPSSTSVEVSISSSSLSSSDPLTSSTFSSLSSSTSSSQPSVSSTSSSTFSSAAPT 203

Query: 320 STLYGVLGSTNASITCTSALSCNSGWL 240
           ST    L S++   + +S  S +S  L
Sbjct: 204 STSSSYLSSSSVVSSSSSPSSSSSSTL 230


>SPCC757.10 |vph2||endoplasmic reticulum membrane involved in
           assembly of the V-ATPase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 186

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -3

Query: 323 ISTLYGVLGSTNASITCTSALSCNSGWLLCLF 228
           I+ L+ V+G+  A   CTS+LS      LC F
Sbjct: 90  INILFTVVGTVTAVWYCTSSLSIEKKIALCAF 121


>SPBC1826.01c |mot1||TATA-binding protein associated factor
            Mot1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1953

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 16/63 (25%), Positives = 27/63 (42%)
 Frame = +1

Query: 112  DLRQDGEENIQTDIKNVVVLIAVPQKLQIPTDILDYLRTNKQSNQPELQDRADVQVMEAF 291
            D  QD      T    +V L+ +   L  P D+  YL  +++  +  L+   +   +EAF
Sbjct: 1289 DADQDVRVLATTSFATLVKLVPLEAGLPDPPDLPQYLLDSREKERKFLEQMLNPSKVEAF 1348

Query: 292  VEP 300
              P
Sbjct: 1349 SIP 1351


>SPAC23D3.08 |usp108||U1 snRNP-associated protein
           Usp108|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 382

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 15/65 (23%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
 Frame = +1

Query: 157 NVVVLIAVPQKLQIPTDILDYLRTNKQSNQPELQD--RADVQVMEAFVEPNTPYRVEIGT 330
           N+     V QK+ +P+ +LD L         E+     A++ V E+    N  +   +GT
Sbjct: 257 NIAATQVVSQKMSVPSSLLDQLYHAMPHKLMEISQNTNANITVEESDSNSNEKFISVVGT 316

Query: 331 NNRSE 345
           +  ++
Sbjct: 317 SEANQ 321


>SPCC737.06c |||glutamate-cysteine ligase regulatory subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 287

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = +1

Query: 124 DGEENIQTDIKNVVVLIAVPQKL 192
           DG+EN++ +IK +V +   PQKL
Sbjct: 51  DGDENLKKNIKVLVPVNEKPQKL 73


>SPCC1450.04 |tef5||translation elongation factor EF-1 beta subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 214

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 17/51 (33%), Positives = 25/51 (49%)
 Frame = +1

Query: 319 EIGTNNRSEGDGRASEVVIPSQRNVDLEAQVDPDELKLLGATEQCGPEGER 471
           +I T + +   G A EV   S    +  A  + DE+ L G+ E+  PE ER
Sbjct: 59  QIATYDLATLPGTAKEV---SAYGPEGAAAAEEDEIDLFGSDEEEDPEAER 106


>SPBC16G5.14c |rps3||40S ribosomal protein S3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 249

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = -3

Query: 581 ITSGFGWDSILTFFSAELSSELGAGCDRSLHTRVTGSRS 465
           +  G  +  +  FF+ ELS E  +GC+     RVT SRS
Sbjct: 14  VADGVFYAELNEFFTRELSEEGYSGCE----VRVTPSRS 48


>SPAC4G8.07c |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 527

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = -1

Query: 346 LQNDYSYRSQLYMEY*ALQTPP*PVHRLCPVTRAGCSVCSSSS 218
           +QN  S R+     +  L TP  P H++   TRA  S+  +++
Sbjct: 24  IQNILSARTLKICRFRFLPTPSHPTHKMAQETRAISSISEAAN 66


>SPAC959.03c |||U3 snoRNP-associated protein
           Utp7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 520

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -2

Query: 321 LNSIWSIRLYKRLHNLY 271
           L  +W +R YK LH+ Y
Sbjct: 288 LLKVWDLRTYKELHSYY 304


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.314    0.133    0.374 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,437,863
Number of Sequences: 5004
Number of extensions: 51276
Number of successful extensions: 124
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 254167452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)