Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0007_J07
(589 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0303 + 2493388-2493954 31 0.52
01_01_0359 + 2829325-2832076,2832223-2832593,2833335-2833695,283... 31 0.68
08_02_0988 + 23346696-23347523 30 1.2
10_01_0097 - 1171949-1172047,1172520-1172591,1172791-1172949,117... 29 2.1
01_05_0282 - 20347915-20348874,20348968-20349012,20349568-203498... 29 2.7
10_08_0731 + 20161962-20163628,20163721-20163862,20164181-201644... 29 3.6
07_03_1427 + 26495072-26495148,26495323-26495468,26495581-264957... 29 3.6
07_01_1023 + 8840754-8842988,8843189-8843362 29 3.6
03_04_0006 + 16257288-16259522 29 3.6
10_01_0168 - 1883380-1883594,1884572-1888325 28 4.8
06_03_0592 + 22585546-22588573,22588680-22589032 28 4.8
07_03_1064 + 23700662-23700787,23701709-23701870,23701983-237021... 28 6.3
06_03_0792 + 24658324-24658763,24659167-24659387,24659765-246598... 27 8.4
03_01_0009 - 89127-89924,90090-90518,90582-90716,91102-91382,916... 27 8.4
02_04_0238 + 21186072-21186883,21187315-21189346 27 8.4
01_07_0384 + 43209423-43210241 27 8.4
>08_01_0303 + 2493388-2493954
Length = 188
Score = 31.5 bits (68), Expect = 0.52
Identities = 15/35 (42%), Positives = 21/35 (60%)
Frame = +2
Query: 68 LRRCSRQRSPHPYSTTYGKTGRKTFKPISKTSLYS 172
L RCSR+R P P +TT T R++ + SL+S
Sbjct: 28 LHRCSRRRRPSPLTTTVALTRRRSPAAVRCFSLHS 62
>01_01_0359 +
2829325-2832076,2832223-2832593,2833335-2833695,
2833799-2833868,2834021-2834108,2834325-2834580,
2834758-2834883,2835217-2835425
Length = 1410
Score = 31.1 bits (67), Expect = 0.68
Identities = 22/69 (31%), Positives = 35/69 (50%)
Frame = -3
Query: 446 SVAPSNFNSSGST*ASRSTFLWLGMTTSDARPSPSERLFVPISTLYGVLGSTNASITCTS 267
S A +++NSSG++ + W G+T S RP+ L +P S L G L ++T
Sbjct: 43 SSALASWNSSGASFCN-----WEGVTCSRRRPTRVASLSLPSSNLAGTLSPAIGNLTFPR 97
Query: 266 ALSCNSGWL 240
L+ +S L
Sbjct: 98 RLNLSSNGL 106
>08_02_0988 + 23346696-23347523
Length = 275
Score = 30.3 bits (65), Expect = 1.2
Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Frame = +1
Query: 259 DRADVQVMEAFVEPNTPYRVEIGTNNRSEGDGRA---SEVVIPSQRNVDLEAQVD 414
DRA V+ + N P+ ++ ++ S GD A S+ + PS R+ D + QV+
Sbjct: 172 DRAAVEFRGPRAKLNFPFPEQLSAHDDSNGDASAAAKSDTLSPSPRSADADEQVE 226
>10_01_0097 -
1171949-1172047,1172520-1172591,1172791-1172949,
1172998-1173381,1173478-1175253,1175329-1175452,
1176859-1177027,1177131-1177226,1177339-1177527,
1177965-1179303
Length = 1468
Score = 29.5 bits (63), Expect = 2.1
Identities = 21/72 (29%), Positives = 34/72 (47%)
Frame = +1
Query: 352 GRASEVVIPSQRNVDLEAQVDPDELKLLGATEQCGPEGERDPVTLVCRLRSQPAPNSEDS 531
G AS+ ++RNV + + +L+G + P RDP+ + +S DS
Sbjct: 540 GSASQSSRSNRRNVGSNEDTESECGRLVGTVRRHTPIDTRDPIGAIIHFY---LGDSFDS 596
Query: 532 SAEKNVKIESQP 567
S+E NV + QP
Sbjct: 597 SSETNVLRKLQP 608
>01_05_0282 -
20347915-20348874,20348968-20349012,20349568-20349816,
20350393-20350581,20351051-20351155,20351165-20351488,
20351493-20351555
Length = 644
Score = 29.1 bits (62), Expect = 2.7
Identities = 19/62 (30%), Positives = 30/62 (48%)
Frame = +1
Query: 307 PYRVEIGTNNRSEGDGRASEVVIPSQRNVDLEAQVDPDELKLLGATEQCGPEGERDPVTL 486
P R E + R+ D + +VIPS V+ V+ ++ + G + CG E+D L
Sbjct: 452 PPRCEETASERAPADNSRA-IVIPSAEPVE---DVELSDIDVRGLCKMCGNPEEKDKRFL 507
Query: 487 VC 492
VC
Sbjct: 508 VC 509
>10_08_0731 +
20161962-20163628,20163721-20163862,20164181-20164490,
20164566-20166466,20166557-20166650,20166953-20167440,
20167919-20168599,20168870-20168944,20170148-20170210,
20170588-20170633,20171373-20171420,20171484-20171557
Length = 1862
Score = 28.7 bits (61), Expect = 3.6
Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = +1
Query: 460 EGERDPVTLVCRL-RSQPAPNSEDSSAEKNVKIESQPNPEVIP 585
E ER P+ + +L R + AP S ++ + N +ES+ V+P
Sbjct: 15 EDERRPIGSLFKLKRKRRAPGSAEAKGDSNPSVESEAPDGVVP 57
>07_03_1427 +
26495072-26495148,26495323-26495468,26495581-26495729,
26495829-26496224
Length = 255
Score = 28.7 bits (61), Expect = 3.6
Identities = 12/26 (46%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
Frame = +3
Query: 129 GGKH-SNRYQKRRCTHRSTAKVADTY 203
GG+H S RY +RR H ++AK A ++
Sbjct: 8 GGQHDSQRYSRRRGCHETSAKAAQSF 33
>07_01_1023 + 8840754-8842988,8843189-8843362
Length = 802
Score = 28.7 bits (61), Expect = 3.6
Identities = 17/68 (25%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
Frame = +1
Query: 223 RTNKQSNQPELQDRADVQVMEAFVEPNTPYRVEIGTNNR-SEGDGRASEVVIPSQRNVDL 399
R N QS+ +Q ++ + + + Y I T+ +EG+ AS +P++ N D
Sbjct: 51 RNNAQSSGVPVQTKSTIPSKQLTIPAAQCYASSISTSILWNEGNNNASSQTLPNEPNCDT 110
Query: 400 EAQVDPDE 423
+ P+E
Sbjct: 111 SSDKLPEE 118
>03_04_0006 + 16257288-16259522
Length = 744
Score = 28.7 bits (61), Expect = 3.6
Identities = 12/37 (32%), Positives = 22/37 (59%)
Frame = +3
Query: 159 RRCTHRSTAKVADTYRYIGLLEDEQTEQPARVTGQSR 269
RR + S +V + YR+I + + EQP ++T ++R
Sbjct: 305 RRKSQFSDVRVEEQYRHIEIFDVASPEQPVKITQKTR 341
>10_01_0168 - 1883380-1883594,1884572-1888325
Length = 1322
Score = 28.3 bits (60), Expect = 4.8
Identities = 22/69 (31%), Positives = 36/69 (52%)
Frame = -2
Query: 378 WDDNLRRTAVTFRTIIRTDLNSIWSIRLYKRLHNLYIGSVL*LGLVALFVRPQVIQYIGR 199
+DD LR+ + T RT++ N+ SI + +L G L + L +RP ++++ R
Sbjct: 547 FDDFLRKQSTTLRTLLYPTWNTYGSIHHLSKCISLR-GLQL-YEIKELPIRPIKLKHL-R 603
Query: 198 YLQLLRYCD 172
YL L CD
Sbjct: 604 YLNLSENCD 612
>06_03_0592 + 22585546-22588573,22588680-22589032
Length = 1126
Score = 28.3 bits (60), Expect = 4.8
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = -3
Query: 272 TSALSCNSGWLLCLFVLK*SNISVGICN 189
+S LS N W+LC F+ +IS+ ICN
Sbjct: 4 SSVLSPNIAWVLCHFIF--CSISLAICN 29
>07_03_1064 +
23700662-23700787,23701709-23701870,23701983-23702101,
23703128-23703202,23704387-23704480,23704856-23704915,
23705083-23705151,23705457-23705555,23706201-23706245,
23706339-23706441,23706665-23706723
Length = 336
Score = 27.9 bits (59), Expect = 6.3
Identities = 17/68 (25%), Positives = 34/68 (50%)
Frame = +1
Query: 31 GDLLIARIMLIIFASLFATAFAAPVFYDLRQDGEENIQTDIKNVVVLIAVPQKLQIPTDI 210
GD+L+ R + ++ + +L +D +NIQ + +V L A + PT++
Sbjct: 238 GDMLLDRSNSTVMMRYVSSKDNLMILMNLLRDSSKNIQIEAFHVFKLFAANKNK--PTEV 295
Query: 211 LDYLRTNK 234
++ L TN+
Sbjct: 296 VNILVTNR 303
>06_03_0792 +
24658324-24658763,24659167-24659387,24659765-24659827,
24659849-24660102
Length = 325
Score = 27.5 bits (58), Expect = 8.4
Identities = 12/29 (41%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Frame = +1
Query: 340 SEGD-GRASEVVIPSQRNVDLEAQVDPDE 423
++GD G+ +EV P D+EA+VD D+
Sbjct: 111 TDGDSGKENEVATPDAEKEDVEAEVDGDD 139
>03_01_0009 -
89127-89924,90090-90518,90582-90716,91102-91382,
91634-91809,91899-92011,92157-92278,92375-92594
Length = 757
Score = 27.5 bits (58), Expect = 8.4
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = -1
Query: 298 ALQTPP*PVHRLCPVTRAGCSVCSS 224
AL T P P H +CP+ + SV SS
Sbjct: 721 ALPTQPPPEHFICPILKVPVSVSSS 745
>02_04_0238 + 21186072-21186883,21187315-21189346
Length = 947
Score = 27.5 bits (58), Expect = 8.4
Identities = 11/36 (30%), Positives = 22/36 (61%)
Frame = -2
Query: 249 GLVALFVRPQVIQYIGRYLQLLRYCDEYNDVFDIGL 142
GL A + ++I + +YL+ +RYC +D++ I +
Sbjct: 249 GLEAAWDEGKLIHEVRKYLRFVRYCVVLDDIWSISV 284
>01_07_0384 + 43209423-43210241
Length = 272
Score = 27.5 bits (58), Expect = 8.4
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = -3
Query: 356 RPSPSERLFVPISTLYGVLGSTNASITCTSALSCNSGW 243
RP S + ST G+++ASI T+ +S N+G+
Sbjct: 204 RPRQSSSASISTSTSTSYTGTSSASINMTTMISLNNGF 241
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.314 0.133 0.374
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,554,596
Number of Sequences: 37544
Number of extensions: 358229
Number of successful extensions: 785
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 772
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 785
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1388195172
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
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