Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0007_J06
(628 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||M... 32 0.059
SPAC30C2.02 |mmd1||deoxyhypusine hydroxylase |Schizosaccharomyce... 30 0.31
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch... 28 0.96
SPBPB7E8.01 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 27 2.9
SPBC4F6.13c |||WD repeat/BOP1NT protein|Schizosaccharomyces pomb... 27 2.9
SPBC17D1.02 |||diphthamide biosynthesis protein |Schizosaccharom... 26 3.9
SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyce... 26 5.1
SPAC20G8.03 |itr2||MFS myo-inositol transporter|Schizosaccharomy... 26 5.1
SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|... 25 6.8
SPBC31F10.14c |hip3|hir3|HIRA interacting protein Hip3|Schizosac... 25 6.8
SPBC1703.11 |||optic atrophy 3 family protein|Schizosaccharomyce... 25 6.8
SPBC23E6.07c |rfc1||DNA replication factor C complex subunit Rfc... 25 6.8
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar... 25 9.0
SPAC1093.03 |||inositol polyphosphate phosphatase |Schizosacchar... 25 9.0
>SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1052
Score = 32.3 bits (70), Expect = 0.059
Identities = 22/53 (41%), Positives = 32/53 (60%)
Frame = +2
Query: 35 DNSINQDELIMKQQREIEKEISETIPLVGDLEELASLEKEYNEDPVYLLKVKD 193
+NSI QDE+ +Q +IEK+ E I V + E L +LE E E P ++V+D
Sbjct: 908 ENSILQDEVEETRQDDIEKDELEDIKEVKEDENLTTLE-ETIEIPANDIEVQD 959
>SPAC30C2.02 |mmd1||deoxyhypusine hydroxylase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 318
Score = 29.9 bits (64), Expect = 0.31
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +2
Query: 65 MKQQREIEKEISETIPLVGDLEELASLEKEYNEDPV 172
+ QQ + E +E + +G E L LEK Y EDP+
Sbjct: 90 LDQQVMVRHEAAEALGALGFTESLPVLEKYYKEDPL 125
>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 750
Score = 28.3 bits (60), Expect = 0.96
Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
Frame = +2
Query: 26 KLVDNSINQDELIMKQQREIEKEI---SETIPLVGDLEELASLEKE 154
KL NQ+ LI++++ E+EK I SE + LE S+E+E
Sbjct: 134 KLNSEISNQNSLILQKKDELEKSIQRCSELEEKINSLESAQSIEQE 179
>SPBPB7E8.01 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 569
Score = 26.6 bits (56), Expect = 2.9
Identities = 16/36 (44%), Positives = 21/36 (58%)
Frame = -2
Query: 171 TGSSLYSFSKDASSSRSPTSGIVSEISFSISRCCFM 64
+ SS S S ASSS S TSG ++ FS+S+ M
Sbjct: 521 SSSSTASSSASASSSTSATSGAAGDL-FSVSKNLMM 555
>SPBC4F6.13c |||WD repeat/BOP1NT protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 736
Score = 26.6 bits (56), Expect = 2.9
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +2
Query: 140 SLEKEYNEDPVYLLKVKDLSSKYKSIR 220
S E+ YN YL + D KYKS+R
Sbjct: 291 SHEESYNPPEEYLKQSSDFPKKYKSLR 317
>SPBC17D1.02 |||diphthamide biosynthesis protein
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 503
Score = 26.2 bits (55), Expect = 3.9
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +2
Query: 83 IEKEISETIPLVGDLEELASLEK 151
+EKEI ET+ + GDL E+ + +
Sbjct: 19 LEKEIGETVKIEGDLVEVYEINR 41
>SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2310
Score = 25.8 bits (54), Expect = 5.1
Identities = 21/75 (28%), Positives = 35/75 (46%), Gaps = 12/75 (16%)
Frame = +2
Query: 281 LLTDKEEYNK-FHEIA--KNSKDILVALG---------FSQFTVEDFYETFMEVVQRVGE 424
LLT+ +Y + FHE+ + +D+L + ++ D T+ +VV GE
Sbjct: 328 LLTNSSDYVRIFHELVAFSSKRDLLTSAKRVDKLPKQHLFKYRPVDNEATYCQVVTVTGE 387
Query: 425 QADGTPEMLNAVRTE 469
+ G +LNAV E
Sbjct: 388 KGSGKSNLLNAVADE 402
>SPAC20G8.03 |itr2||MFS myo-inositol transporter|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 557
Score = 25.8 bits (54), Expect = 5.1
Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 1/60 (1%)
Frame = +2
Query: 161 EDPVYLLKVKDLSSKYKSIRRTRPDGNCFFRAFSYAYL-EYLLTDKEEYNKFHEIAKNSK 337
E P YLL+ + YK + R P+ A+ + + E + D E NKF + K
Sbjct: 262 ESPRYLLRHNHVEKVYKILSRIHPEAKPAEIAYKVSLIQEGVKVDFPEGNKFQHFFHSLK 321
>SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1184
Score = 25.4 bits (53), Expect = 6.8
Identities = 11/38 (28%), Positives = 22/38 (57%)
Frame = +2
Query: 110 PLVGDLEELASLEKEYNEDPVYLLKVKDLSSKYKSIRR 223
P+V +L E A+ E+E E ++K L+ + K +++
Sbjct: 700 PMVSELSERAAQERERKEQAKEAKRLKKLAKEEKRLKK 737
>SPBC31F10.14c |hip3|hir3|HIRA interacting protein
Hip3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1630
Score = 25.4 bits (53), Expect = 6.8
Identities = 14/53 (26%), Positives = 24/53 (45%), Gaps = 3/53 (5%)
Frame = +2
Query: 257 FSYAYLEYLLTDKEEYNKFH---EIAKNSKDILVALGFSQFTVEDFYETFMEV 406
F Y Y E L D+++ + H EI K + + + F ++ F + EV
Sbjct: 1476 FKYVYKEISLLDEQKLSLLHQVYEIRKLNNGLYPTIKVDDFLIDCFMSLYNEV 1528
>SPBC1703.11 |||optic atrophy 3 family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 218
Score = 25.4 bits (53), Expect = 6.8
Identities = 18/60 (30%), Positives = 34/60 (56%)
Frame = +2
Query: 62 IMKQQREIEKEISETIPLVGDLEELASLEKEYNEDPVYLLKVKDLSSKYKSIRRTRPDGN 241
IM++Q ++K+ +E L EE+ S EK+++E +LKV+ + ++R+ P N
Sbjct: 131 IMEKQFVLQKKKNE---LQSSTEEIDSTEKDFDELHKVILKVE---RELHTLRQNTPSQN 184
>SPBC23E6.07c |rfc1||DNA replication factor C complex subunit
Rfc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 934
Score = 25.4 bits (53), Expect = 6.8
Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Frame = +2
Query: 47 NQDELIMK--QQREIEKEISETIPLVGDLEELASLEKEYNEDPVYLLKVKDLSSKYKSIR 220
+ D L MK QRE+ ++ + I ++ E AS + NE+ + L K K +S K +
Sbjct: 853 SSDVLPMKGSAQREVP-DVEDAIEAEDEMLEEASDSEAANEEDIDLSKDKFISVPKKPKK 911
Query: 221 RTR 229
RT+
Sbjct: 912 RTK 914
>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1131
Score = 25.0 bits (52), Expect = 9.0
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = -2
Query: 198 DKSLTFNR*TGSSLYSFSKDASSSRSPTSGIVSEISFSIS 79
D S T+N SS S S ++ PT+ I SE+S +S
Sbjct: 683 DSSSTYNSTGSSSSDSQSFSGTTYSDPTTTITSEVSSILS 722
>SPAC1093.03 |||inositol polyphosphate phosphatase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 832
Score = 25.0 bits (52), Expect = 9.0
Identities = 12/40 (30%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = +2
Query: 473 HDKFNKQGYSDYIVVYLRLITSGQLQTEQDFYQNSI-EGP 589
HD+ Y+DY ++ I +L T D++ ++I E P
Sbjct: 770 HDRAMYNNYADYSPDKIKEIKEKELNTYNDYFNSAISENP 809
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,384,131
Number of Sequences: 5004
Number of extensions: 46029
Number of successful extensions: 180
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 180
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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