Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0007_J05
         (364 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0272 - 16278136-16278289,16278873-16278970,16279090-162792...    49   1e-06
07_01_0176 - 1244704-1245102                                           28   2.6  
08_02_1483 - 27451391-27451794,27451883-27452387                       27   4.5  
06_01_1105 + 9102059-9102167,9103770-9103907,9104125-9104267,910...    27   4.5  

>09_04_0272 -
           16278136-16278289,16278873-16278970,16279090-16279230,
           16279701-16279865,16279941-16280117,16280330-16280510,
           16280784-16280829,16281178-16281241,16281331-16281353,
           16281964-16282036,16282410-16282541,16283343-16283429,
           16283488-16283700
          Length = 517

 Score = 49.2 bits (112), Expect = 1e-06
 Identities = 20/25 (80%), Positives = 22/25 (88%)
 Frame = +2

Query: 95  GHQKATGGGRECGSDSWKNYMRRST 169
           G +KATGGGRE GSDSWK YMRR+T
Sbjct: 492 GGEKATGGGREAGSDSWKQYMRRAT 516


>07_01_0176 - 1244704-1245102
          Length = 132

 Score = 27.9 bits (59), Expect = 2.6
 Identities = 13/43 (30%), Positives = 18/43 (41%)
 Frame = +2

Query: 11  TYCSKCDICFETRKAYEEHLFQSAMHSEGHQKATGGGRECGSD 139
           T C +   C++ R    E  F+S    + H    GGG  C  D
Sbjct: 82  TVCMEKGACYKKRLTCPEKCFKSFSFKDKHGGGGGGGGGCSFD 124


>08_02_1483 - 27451391-27451794,27451883-27452387
          Length = 302

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 9/35 (25%), Positives = 20/35 (57%)
 Frame = +2

Query: 29  DICFETRKAYEEHLFQSAMHSEGHQKATGGGRECG 133
           ++ ++T  +   H+F+  +H  G + ++GGG   G
Sbjct: 204 EVAYQTTVSIGGHVFKGILHDVGPEHSSGGGGGMG 238


>06_01_1105 +
           9102059-9102167,9103770-9103907,9104125-9104267,
           9104362-9104515,9104610-9104839,9105382-9105471,
           9105606-9105779,9105873-9106010,9106212-9106349,
           9106450-9106511,9106744-9106972,9108531-9109364
          Length = 812

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 14/31 (45%), Positives = 21/31 (67%)
 Frame = +2

Query: 68  LFQSAMHSEGHQKATGGGRECGSDSWKNYMR 160
           +F +A+   G+ K +G GRE G DS KNY++
Sbjct: 506 VFDAAIPFGGY-KQSGIGREKGIDSLKNYLQ 535


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,599,803
Number of Sequences: 37544
Number of extensions: 145615
Number of successful extensions: 407
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 399
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 406
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 566473892
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)