Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0007_J04
(612 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC16A11.10c |oca8||cytochrome b5 |Schizosaccharomyces pombe|ch... 44 2e-05
SPCC330.03c |||NADPH-hemoprotein reductase|Schizosaccharomyces p... 36 0.005
SPAC1F12.10c |||NADPH-hemoprotein reductase |Schizosaccharomyces... 35 0.008
SPAC23G3.01 |rpb2|SPAC521.06|DNA-directed RNA polymerase II comp... 27 2.1
SPAC227.15 |||protein phosphatase regulatory subunit Reg1 |Schiz... 26 3.7
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 26 3.7
SPCC1259.02c |||aminopeptidase |Schizosaccharomyces pombe|chr 3|... 26 4.9
SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos... 26 4.9
SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces pom... 25 6.5
SPCC895.08c |||conserved fungal protein|Schizosaccharomyces pomb... 25 8.6
>SPCC16A11.10c |oca8||cytochrome b5 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 129
Score = 44.0 bits (99), Expect = 2e-05
Identities = 18/34 (52%), Positives = 27/34 (79%)
Frame = +2
Query: 488 DRTITLVEVSLHDTPDDCWVVIYDRVFDISTFLD 589
++TIT+ EV H+T DD ++V+ D+V+DIS FLD
Sbjct: 3 EKTITVEEVLKHNTRDDLYIVVKDKVYDISKFLD 36
>SPCC330.03c |||NADPH-hemoprotein reductase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 145
Score = 35.9 bits (79), Expect = 0.005
Identities = 11/31 (35%), Positives = 23/31 (74%)
Frame = +2
Query: 494 TITLVEVSLHDTPDDCWVVIYDRVFDISTFL 586
++T E++ H +PDDCW+ I +V++++ +L
Sbjct: 71 SVTAEELAKHCSPDDCWMAIRGKVYNVTAYL 101
>SPAC1F12.10c |||NADPH-hemoprotein reductase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 147
Score = 35.1 bits (77), Expect = 0.008
Identities = 15/43 (34%), Positives = 26/43 (60%)
Frame = +2
Query: 458 QIIPGAEDAKDRTITLVEVSLHDTPDDCWVVIYDRVFDISTFL 586
Q + G E K +T E++ H T +DCW+ I +V+++S +L
Sbjct: 63 QNLSGVE--KPIPVTKEELAKHKTKEDCWIAIRGKVYNVSAYL 103
>SPAC23G3.01 |rpb2|SPAC521.06|DNA-directed RNA polymerase II complex
subunit Rpb2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1210
Score = 27.1 bits (57), Expect = 2.1
Identities = 10/24 (41%), Positives = 18/24 (75%)
Frame = -3
Query: 568 KDSIVNNDPAIVRGVMQADFYKSY 497
+DSI+ N +I RG+ ++ FY++Y
Sbjct: 825 EDSIIMNQASIDRGLFRSIFYRTY 848
>SPAC227.15 |||protein phosphatase regulatory subunit Reg1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 873
Score = 26.2 bits (55), Expect = 3.7
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = +2
Query: 338 STAIPVNQDNSELDLMALTMAALRFVNPWTVESEKNKWT 454
STAIP ++D+S D + + +NP S +N ++
Sbjct: 118 STAIPFSKDSSVFDAVGQQSSVPIHINPAYTNSHQNSYS 156
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 26.2 bits (55), Expect = 3.7
Identities = 37/148 (25%), Positives = 49/148 (33%)
Frame = -1
Query: 597 LTSSRNVEISKTRS*ITTQQSSGVSCKLTSTRVIVRSLASSAPGIIWSVHLFFSDSTVHG 418
LTSS ++ S T S T +S S LTS+ SLASS+ S L S T
Sbjct: 85 LTSSSSLASSSTNS---TTSASPTSSSLTSSSATSSSLASSS---TTSSSLASSSITSSS 138
Query: 417 FTNRKAAIVKAIRSSSLLS*LTGIAVESLISGTVCTVAXXXXXXXXXXXXXXXXXXXLMT 238
+ SS+ S L + S S T + A +
Sbjct: 139 LASSSITSSSLASSSTTSSSLASSSTNSTTSATPTSSATSSSLSSTAASNSATSSSLASS 198
Query: 237 DLFL*AYDTNMRSLVSDILLINALGSKS 154
L T S +S N+ S S
Sbjct: 199 SLNSTTSATATSSSLSSTAASNSATSSS 226
>SPCC1259.02c |||aminopeptidase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 822
Score = 25.8 bits (54), Expect = 4.9
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = -1
Query: 552 ITTQQSSGVSCKLTSTRVIVRSLASSAPGIIWSVHLFFSD 433
+TT S S K+ V+ ++ PG+IW+V F +D
Sbjct: 687 VTTLPSIKFSNKVVKDNVVNVTVTVEHPGLIWTVVSFDAD 726
>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
Rad50|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1290
Score = 25.8 bits (54), Expect = 4.9
Identities = 17/62 (27%), Positives = 31/62 (50%)
Frame = +2
Query: 227 RNRSVIRVN*DLRSC*RLVKRKKIKMATVQTVPEIKLSTAIPVNQDNSELDLMALTMAAL 406
R R IR++ ++S L + KKIK T+++ S + SE++ T+ +L
Sbjct: 595 RERLEIRISLSVQSINDLTENKKIKTKTLKSYSGTFASMISEIKALESEIEENRKTLHSL 654
Query: 407 RF 412
+F
Sbjct: 655 QF 656
>SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 569
Score = 25.4 bits (53), Expect = 6.5
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = -3
Query: 571 IKDSIVNNDPAIVRGVMQADFYK 503
+K++ N D AI+R V+ A YK
Sbjct: 25 LKEAFPNTDDAIIRAVLAASGYK 47
>SPCC895.08c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 490
Score = 25.0 bits (52), Expect = 8.6
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = +2
Query: 410 FVNPWTVESEKNKWTDQIIPGAEDAKDRTI 499
F N TV E KW+ I+PG + TI
Sbjct: 287 FRNSITVLFEDGKWSPPIVPGLHSRVEFTI 316
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,200,636
Number of Sequences: 5004
Number of extensions: 40553
Number of successful extensions: 123
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 267622334
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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