Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0007_J04
(612 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_07_0340 + 42851330-42851413,42852179-42852245,42852336-42852592 44 7e-05
05_01_0065 + 461182-461271,462222-462288,462408-462664 41 9e-04
02_05_0137 - 26181793-26182055,26182172-26182238,26182392-26182478 38 0.008
12_01_0743 + 6676906-6677007,6677160-6677226,6678246-6678529 34 0.077
02_05_0889 - 32532495-32533832,32533919-32534151,32534321-325344... 34 0.077
08_02_0958 - 23044708-23046045,23046131-23046363,23047059-230471... 33 0.18
08_02_0956 + 23026108-23027146,23027255-23027395,23029334-230295... 33 0.18
07_01_0887 + 7380332-7380370,7381286-7381640,7382752-7382886,738... 32 0.41
03_02_0784 - 11154395-11154888,11155284-11155360,11155447-111554... 30 1.7
09_06_0020 - 20267190-20267612,20269086-20269495,20269573-202697... 28 5.1
07_03_1503 + 27017933-27018063,27019668-27019727,27019996-270201... 28 5.1
>01_07_0340 + 42851330-42851413,42852179-42852245,42852336-42852592
Length = 135
Score = 44.4 bits (100), Expect = 7e-05
Identities = 15/37 (40%), Positives = 29/37 (78%)
Frame = +2
Query: 482 AKDRTITLVEVSLHDTPDDCWVVIYDRVFDISTFLDE 592
+ ++ +TL EVS H+T DDCW++I +V++++ FL++
Sbjct: 2 SNNKVLTLEEVSKHNTKDDCWLIIGGKVYNVTKFLED 38
>05_01_0065 + 461182-461271,462222-462288,462408-462664
Length = 137
Score = 40.7 bits (91), Expect = 9e-04
Identities = 14/34 (41%), Positives = 26/34 (76%)
Frame = +2
Query: 491 RTITLVEVSLHDTPDDCWVVIYDRVFDISTFLDE 592
+ TL EV+ H++ DDCW++I +V+++S FL++
Sbjct: 7 KVYTLEEVAKHNSKDDCWLIIGGKVYNVSKFLED 40
>02_05_0137 - 26181793-26182055,26182172-26182238,26182392-26182478
Length = 138
Score = 37.5 bits (83), Expect = 0.008
Identities = 13/28 (46%), Positives = 21/28 (75%)
Frame = +2
Query: 509 EVSLHDTPDDCWVVIYDRVFDISTFLDE 592
EVS H+ DCW++I +V+D+S F++E
Sbjct: 12 EVSKHNDRKDCWLIIAGKVYDVSPFMEE 39
>12_01_0743 + 6676906-6677007,6677160-6677226,6678246-6678529
Length = 150
Score = 34.3 bits (75), Expect = 0.077
Identities = 11/24 (45%), Positives = 19/24 (79%)
Frame = +2
Query: 521 HDTPDDCWVVIYDRVFDISTFLDE 592
H + DCWVVI+ +V+D++ FL++
Sbjct: 21 HASRKDCWVVIHGKVYDVTKFLED 44
>02_05_0889 -
32532495-32533832,32533919-32534151,32534321-32534461,
32534564-32535521
Length = 889
Score = 34.3 bits (75), Expect = 0.077
Identities = 11/31 (35%), Positives = 20/31 (64%)
Frame = +2
Query: 500 TLVEVSLHDTPDDCWVVIYDRVFDISTFLDE 592
T+ EV H TP+ W++++ V+D + FL +
Sbjct: 517 TMSEVRRHTTPESAWIIVHGHVYDCTGFLKD 547
>08_02_0958 -
23044708-23046045,23046131-23046363,23047059-23047199,
23047296-23048334
Length = 916
Score = 33.1 bits (72), Expect = 0.18
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = +2
Query: 491 RTITLVEVSLHDTPDDCWVVIYDRVFDISTFLDE 592
+ T+ EV H + D W+V++ V+D + FL +
Sbjct: 542 KQFTMSEVRKHSSQDSAWIVVHGHVYDCTAFLKD 575
>08_02_0956 +
23026108-23027146,23027255-23027395,23029334-23029566,
23029652-23030989
Length = 916
Score = 33.1 bits (72), Expect = 0.18
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = +2
Query: 491 RTITLVEVSLHDTPDDCWVVIYDRVFDISTFLDE 592
+ T+ EV H + D W+V++ V+D + FL +
Sbjct: 542 KQFTMSEVRKHSSQDSAWIVVHGHVYDCTAFLKD 575
>07_01_0887 +
7380332-7380370,7381286-7381640,7382752-7382886,
7383029-7383138
Length = 212
Score = 31.9 bits (69), Expect = 0.41
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = +2
Query: 491 RTITLVEVSLHDTPDDCWVVIYDRVFDISTFL 586
R I+L EV H T D W V+ RV++I+ ++
Sbjct: 140 RLISLEEVKQHKTGDSIWTVLKGRVYNIAPYM 171
>03_02_0784 -
11154395-11154888,11155284-11155360,11155447-11155497,
11155599-11155672,11156127-11156215,11156533-11156618,
11157570-11157669,11158540-11158622,11158776-11159194
Length = 490
Score = 29.9 bits (64), Expect = 1.7
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = -3
Query: 502 SYCTILSILRPGYYLVRPFVFLRFNRPWVHKS 407
++CT+L L + V PF FLR + W H S
Sbjct: 188 NFCTLLDTLAELHSAVVPFFFLRKDYQWFHDS 219
>09_06_0020 -
20267190-20267612,20269086-20269495,20269573-20269747,
20270833-20271066,20271164-20271265,20271354-20272091,
20272204-20272321,20272417-20272667,20272768-20272932
Length = 871
Score = 28.3 bits (60), Expect = 5.1
Identities = 11/42 (26%), Positives = 21/42 (50%)
Frame = -1
Query: 546 TQQSSGVSCKLTSTRVIVRSLASSAPGIIWSVHLFFSDSTVH 421
+ SS + C+L T IV+ + + + W VH + ++ H
Sbjct: 510 SSSSSYMGCRLLPTGCIVQDMNNGYSKVTWVVHAEYDETAAH 551
>07_03_1503 +
27017933-27018063,27019668-27019727,27019996-27020101,
27020254-27020325,27021008-27021061,27021707-27021856,
27022206-27022547,27022651-27024684,27024706-27024947,
27025658-27026235,27026329-27028183,27028533-27028851,
27028980-27029417
Length = 2126
Score = 28.3 bits (60), Expect = 5.1
Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Frame = +2
Query: 377 DLMALTMAALRFVNPWTVESEKNKWTDQIIPGAEDAKDRTITLVE-VSLHDTPDDC 541
D+ AL + LRF+NP +VE E QI + + T+T ++ V + +DC
Sbjct: 773 DVKALVSSMLRFINPHSVEEEH----CQIKTNPQGSSASTVTQIDTVDVKHDCEDC 824
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,523,908
Number of Sequences: 37544
Number of extensions: 244124
Number of successful extensions: 581
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 572
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 581
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1466594128
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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