Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0007_J04
(612 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81052-7|CAJ58492.1| 103|Caenorhabditis elegans Hypothetical pr... 41 6e-04
Z78539-6|CAB01732.2| 134|Caenorhabditis elegans Hypothetical pr... 40 0.001
AL032654-5|CAD91715.2| 516|Caenorhabditis elegans Hypothetical ... 38 0.007
AL032654-4|CAA21721.2| 552|Caenorhabditis elegans Hypothetical ... 38 0.007
AF003141-8|AAK21480.1| 141|Caenorhabditis elegans Hypothetical ... 37 0.010
U13875-11|AAA21158.1| 1193|Caenorhabditis elegans Rna polymerase... 29 2.0
U10333-1|AAA50224.1| 859|Caenorhabditis elegans RNA polymerase ... 29 2.0
AF022985-5|AAB69974.1| 299|Caenorhabditis elegans Hypothetical ... 29 3.5
Z75711-11|CAB00038.1| 755|Caenorhabditis elegans Hypothetical p... 28 6.0
Z75710-10|CAB00029.1| 755|Caenorhabditis elegans Hypothetical p... 28 6.0
Z74038-3|CAA98498.2| 89|Caenorhabditis elegans Hypothetical pr... 27 8.0
>Z81052-7|CAJ58492.1| 103|Caenorhabditis elegans Hypothetical
protein D2023.1b protein.
Length = 103
Score = 41.1 bits (92), Expect = 6e-04
Identities = 14/34 (41%), Positives = 25/34 (73%)
Frame = +2
Query: 488 DRTITLVEVSLHDTPDDCWVVIYDRVFDISTFLD 589
D IT EV++H + DDCW+++ + V+D++ F+D
Sbjct: 3 DSIITRSEVNMHCSEDDCWIIVGNYVYDVTKFVD 36
>Z78539-6|CAB01732.2| 134|Caenorhabditis elegans Hypothetical
protein C31E10.7 protein.
Length = 134
Score = 39.9 bits (89), Expect = 0.001
Identities = 16/34 (47%), Positives = 25/34 (73%)
Frame = +2
Query: 491 RTITLVEVSLHDTPDDCWVVIYDRVFDISTFLDE 592
+ ITL E++ H+T W+VI ++VFD++ FLDE
Sbjct: 5 KQITLKEIAEHNTNKSAWLVIGNKVFDVTKFLDE 38
>AL032654-5|CAD91715.2| 516|Caenorhabditis elegans Hypothetical
protein Y52B11A.3b protein.
Length = 516
Score = 37.5 bits (83), Expect = 0.007
Identities = 13/28 (46%), Positives = 21/28 (75%)
Frame = +2
Query: 506 VEVSLHDTPDDCWVVIYDRVFDISTFLD 589
VE+ H+T DDCWV ++ V+D++ +LD
Sbjct: 24 VELMKHNTKDDCWVHLFGIVYDVTKYLD 51
>AL032654-4|CAA21721.2| 552|Caenorhabditis elegans Hypothetical
protein Y52B11A.3a protein.
Length = 552
Score = 37.5 bits (83), Expect = 0.007
Identities = 13/28 (46%), Positives = 21/28 (75%)
Frame = +2
Query: 506 VEVSLHDTPDDCWVVIYDRVFDISTFLD 589
VE+ H+T DDCWV ++ V+D++ +LD
Sbjct: 60 VELMKHNTKDDCWVHLFGIVYDVTKYLD 87
>AF003141-8|AAK21480.1| 141|Caenorhabditis elegans Hypothetical
protein W02D3.1 protein.
Length = 141
Score = 37.1 bits (82), Expect = 0.010
Identities = 17/37 (45%), Positives = 24/37 (64%), Gaps = 3/37 (8%)
Frame = +2
Query: 491 RTITLVEVSLH---DTPDDCWVVIYDRVFDISTFLDE 592
R I+L EVS H D CW+VI +V+D++ FL+E
Sbjct: 5 RVISLDEVSKHNWEDADQSCWIVISGKVYDVTKFLNE 41
>U13875-11|AAA21158.1| 1193|Caenorhabditis elegans Rna polymerase ii
(b) subunit protein2 protein.
Length = 1193
Score = 29.5 bits (63), Expect = 2.0
Identities = 11/24 (45%), Positives = 19/24 (79%)
Frame = -3
Query: 568 KDSIVNNDPAIVRGVMQADFYKSY 497
+DS++ N+ AI RG+ ++ FY+SY
Sbjct: 797 EDSVIMNNSAIDRGLFRSVFYRSY 820
>U10333-1|AAA50224.1| 859|Caenorhabditis elegans RNA polymerase II,
second largestsubunit protein.
Length = 859
Score = 29.5 bits (63), Expect = 2.0
Identities = 11/24 (45%), Positives = 19/24 (79%)
Frame = -3
Query: 568 KDSIVNNDPAIVRGVMQADFYKSY 497
+DS++ N+ AI RG+ ++ FY+SY
Sbjct: 598 EDSVIMNNSAIDRGLFRSVFYRSY 621
>AF022985-5|AAB69974.1| 299|Caenorhabditis elegans Hypothetical
protein T15B7.8 protein.
Length = 299
Score = 28.7 bits (61), Expect = 3.5
Identities = 13/37 (35%), Positives = 25/37 (67%)
Frame = +2
Query: 317 TVPEIKLSTAIPVNQDNSELDLMALTMAALRFVNPWT 427
++ EIKL+++IPV++ N+E D + +T + V+ T
Sbjct: 59 SIEEIKLNSSIPVSEINAENDPIKITRTVIPTVSAKT 95
>Z75711-11|CAB00038.1| 755|Caenorhabditis elegans Hypothetical
protein D1081.8 protein.
Length = 755
Score = 27.9 bits (59), Expect = 6.0
Identities = 11/39 (28%), Positives = 22/39 (56%)
Frame = +2
Query: 290 KKIKMATVQTVPEIKLSTAIPVNQDNSELDLMALTMAAL 406
+K+K + PE K + P++ D+ EL++++ A L
Sbjct: 122 RKLKPGEIDPTPETKPARPDPIDMDDDELEMLSEARARL 160
>Z75710-10|CAB00029.1| 755|Caenorhabditis elegans Hypothetical
protein D1081.8 protein.
Length = 755
Score = 27.9 bits (59), Expect = 6.0
Identities = 11/39 (28%), Positives = 22/39 (56%)
Frame = +2
Query: 290 KKIKMATVQTVPEIKLSTAIPVNQDNSELDLMALTMAAL 406
+K+K + PE K + P++ D+ EL++++ A L
Sbjct: 122 RKLKPGEIDPTPETKPARPDPIDMDDDELEMLSEARARL 160
>Z74038-3|CAA98498.2| 89|Caenorhabditis elegans Hypothetical
protein F58B4.2 protein.
Length = 89
Score = 27.5 bits (58), Expect = 8.0
Identities = 9/31 (29%), Positives = 20/31 (64%)
Frame = +2
Query: 500 TLVEVSLHDTPDDCWVVIYDRVFDISTFLDE 592
T +V H T DD W++ D+V++++ + ++
Sbjct: 13 TRSQVEQHCTHDDLWLLFRDKVYNMTPYFNQ 43
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,078,449
Number of Sequences: 27780
Number of extensions: 230891
Number of successful extensions: 655
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 642
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 655
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1321669750
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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