Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0007_J03
(524 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy... 28 0.98
SPAC23H3.11c |||glucosidase |Schizosaccharomyces pombe|chr 1|||M... 27 1.3
SPAC26A3.10 |||Arf GAP protein|Schizosaccharomyces pombe|chr 1||... 26 4.0
SPBC17A3.09c |||lipoate-protein ligase A |Schizosaccharomyces po... 26 4.0
SPCC622.07 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual 26 4.0
SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr 3|... 25 5.2
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po... 25 5.2
SPCC622.15c |||sequence orphan|Schizosaccharomyces pombe|chr 3||... 25 6.9
SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolo... 25 6.9
SPBC1703.03c |||armadillo repeat protein, unknown biological rol... 25 6.9
SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces po... 25 9.1
SPAC458.06 |||phosphoinositide binding protein|Schizosaccharomyc... 25 9.1
SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr 1|||... 25 9.1
SPCP25A2.03 |||THO complex subunit |Schizosaccharomyces pombe|ch... 25 9.1
SPAC14C4.13 |rad17||RFC related checkpoint protein Rad17|Schizos... 25 9.1
>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 4924
Score = 27.9 bits (59), Expect = 0.98
Identities = 15/37 (40%), Positives = 25/37 (67%)
Frame = +2
Query: 353 LSIAVAKYITISTNN*QHVITSSVLQTAWVPYLNSLG 463
LSI+ AK TI + + + S++L T+W+ +LNS+G
Sbjct: 3546 LSISSAKLSTICRSVLKASVNSALL-TSWICFLNSIG 3581
>SPAC23H3.11c |||glucosidase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 629
Score = 27.5 bits (58), Expect = 1.3
Identities = 15/50 (30%), Positives = 29/50 (58%)
Frame = +1
Query: 82 PQFFVNMDTLLKIYRTKMQDGILHDAKAINYGIVKEEEQYVYYANYSNTF 231
P F ++D L +YR+K +D HD K+ ++ EE+ Y+ ++ + + F
Sbjct: 116 PSQFSSID-LSWVYRSKEEDDDFHDPKSSVVSLMGEED-YLGWSRFCDLF 163
>SPAC26A3.10 |||Arf GAP protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 923
Score = 25.8 bits (54), Expect = 4.0
Identities = 16/57 (28%), Positives = 29/57 (50%)
Frame = +1
Query: 94 VNMDTLLKIYRTKMQDGILHDAKAINYGIVKEEEQYVYYANYSNTFLYNNEEQRLTY 264
+NMD LL Y TK D + +NY ++ Y + N ++F+ +++RL +
Sbjct: 289 MNMDILLDSYLTKAMDIHATFIQKLNYDLI--NLLYEPFHNIYSSFIKPIDDRRLEF 343
>SPBC17A3.09c |||lipoate-protein ligase A |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 363
Score = 25.8 bits (54), Expect = 4.0
Identities = 12/41 (29%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Frame = +1
Query: 103 DTLLKIYRTKMQDG-ILHDAKAINYGIVKEEEQYVYYANYS 222
D + I R K G + HD +NY ++ E++ + N S
Sbjct: 83 DNFVNIIRRKSGGGTVFHDFGNLNYSVLMNREEFSHTENAS 123
>SPCC622.07 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
Length = 128
Score = 25.8 bits (54), Expect = 4.0
Identities = 12/34 (35%), Positives = 23/34 (67%), Gaps = 2/34 (5%)
Frame = -3
Query: 240 IVKESVGIVG-VIHI-LLFLFYNSIINSLCIVKN 145
+ KE I+ +++I ++FLF N +++ +C VKN
Sbjct: 22 VAKEKYKIIHRLLYISIIFLFLNYVVDIVCYVKN 55
>SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 843
Score = 25.4 bits (53), Expect = 5.2
Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Frame = -3
Query: 192 FLFYNSIIN-SLCIVKNTVLHFSAINLK*SVHINEE 88
FLF N N SLC ++T F + S+HI E
Sbjct: 699 FLFSNGSCNTSLCYYESTDPDFGGLKTPMSIHIERE 734
>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1014
Score = 25.4 bits (53), Expect = 5.2
Identities = 13/36 (36%), Positives = 15/36 (41%), Gaps = 3/36 (8%)
Frame = +2
Query: 26 VIQRNDTHGF---VYQLLMKFIHNSSLIWTLYLRFI 124
VI D H YQ S +WTLYL F+
Sbjct: 143 VITLTDAHSLFERAYQTCKFHFSKSQCVWTLYLEFL 178
>SPCC622.15c |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 557
Score = 25.0 bits (52), Expect = 6.9
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = +1
Query: 382 NFYQQLTTRYYFERLTNGLGSIPEF 456
NFY + YF T G+ S+P F
Sbjct: 126 NFYPPIQNSTYFINATGGIDSMPYF 150
>SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolog
3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 925
Score = 25.0 bits (52), Expect = 6.9
Identities = 19/54 (35%), Positives = 22/54 (40%), Gaps = 1/54 (1%)
Frame = +1
Query: 313 HLPFWWSSERYGNLKHRRGEI-YYNFYQQLTTRYYFERLTNGLGSIPEFSWYSP 471
H FWWS + NL E+ NF L FE N + EFS SP
Sbjct: 118 HQKFWWSLRKKRNLPKENSELDLSNFQDDLD----FE---NSISQKNEFSQKSP 164
>SPBC1703.03c |||armadillo repeat protein, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 664
Score = 25.0 bits (52), Expect = 6.9
Identities = 16/62 (25%), Positives = 25/62 (40%)
Frame = +1
Query: 16 LYCSYPAQ*YSWIRLPAPYEVYPQFFVNMDTLLKIYRTKMQDGILHDAKAINYGIVKEEE 195
LY SYP+ + Y +Y FVN + + D + +A I ++ EE
Sbjct: 245 LYFSYPSCLVRVYSIGIIYNIYQSGFVNKKMESVVKGISLFDSFIPEALPILSDLLPSEE 304
Query: 196 QY 201
Y
Sbjct: 305 NY 306
>SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 743
Score = 24.6 bits (51), Expect = 9.1
Identities = 9/27 (33%), Positives = 17/27 (62%)
Frame = +1
Query: 238 NNEEQRLTYLTEDIGFNSYYYYFHSHL 318
+ + Q++ Y+ ++ NSY Y HSH+
Sbjct: 313 SRKTQKIHYINDNDPSNSYSSYQHSHV 339
>SPAC458.06 |||phosphoinositide binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 364
Score = 24.6 bits (51), Expect = 9.1
Identities = 7/19 (36%), Positives = 12/19 (63%)
Frame = +3
Query: 171 LWNCKRGRAVCVLRQLFQH 227
+WN + G +C R+ +QH
Sbjct: 202 IWNSETGEKICEFRRGYQH 220
>SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 948
Score = 24.6 bits (51), Expect = 9.1
Identities = 11/38 (28%), Positives = 22/38 (57%)
Frame = +1
Query: 136 QDGILHDAKAINYGIVKEEEQYVYYANYSNTFLYNNEE 249
Q+ ++ + + +G+V E ++V S TFL +NE+
Sbjct: 128 QNILVQVCQPVRHGVVDSETKFVIERKDSFTFLASNEK 165
>SPCP25A2.03 |||THO complex subunit |Schizosaccharomyces pombe|chr
3|||Manual
Length = 752
Score = 24.6 bits (51), Expect = 9.1
Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 2/52 (3%)
Frame = +1
Query: 196 QYVYYANYSNTFLYNNEEQRLT--YLTEDIGFNSYYYYFHSHLPFWWSSERY 345
Q ++ SN + N L+ Y+T D GF S Y Y S + S E +
Sbjct: 265 QNTFFNGKSNPTIDPNSSSLLSEKYITLDKGFPSKYIYSRSLFEYQLSDEDF 316
>SPAC14C4.13 |rad17||RFC related checkpoint protein
Rad17|Schizosaccharomyces pombe|chr 1|||Manual
Length = 606
Score = 24.6 bits (51), Expect = 9.1
Identities = 10/51 (19%), Positives = 24/51 (47%)
Frame = +1
Query: 130 KMQDGILHDAKAINYGIVKEEEQYVYYANYSNTFLYNNEEQRLTYLTEDIG 282
K D L A+ + + E Y + NY + ++ +++ ++ +D+G
Sbjct: 346 KGNDFSLEAAQVLERLSKSDSEAYARFKNYKSAYIPKSDKNENSFFKKDVG 396
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,209,286
Number of Sequences: 5004
Number of extensions: 45853
Number of successful extensions: 145
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 214353836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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