Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0007_J03
         (524 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0914 + 9010613-9013316,9013537-9013748                           28   4.0  
08_02_0021 + 11307795-11308093,11308454-11308556,11309623-113099...    28   5.3  
02_05_0008 + 24934917-24935229,24936387-24936608,24936876-249375...    28   5.3  
01_06_0693 - 31280108-31281271                                         28   5.3  
04_04_0451 - 25323178-25323241,25323614-25323741,25324533-253246...    27   9.2  
02_04_0622 - 24508508-24508666,24509533-24509634,24510108-245101...    27   9.2  

>08_01_0914 + 9010613-9013316,9013537-9013748
          Length = 971

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 14/44 (31%), Positives = 26/44 (59%)
 Frame = -3

Query: 207 IHILLFLFYNSIINSLCIVKNTVLHFSAINLK*SVHINEELWIN 76
           +H+L+F    ++I+S+C +  T   F    +K +V  NE L++N
Sbjct: 656 LHVLIFCIVGTLISSMCCM--TAYCFIKRKMKLNVVDNENLFLN 697


>08_02_0021 +
           11307795-11308093,11308454-11308556,11309623-11309931,
           11310190-11310618
          Length = 379

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
 Frame = +1

Query: 124 RTKMQDGILHDAKAINYGIVKEEEQYVYYANYSNTFLYNNEE--QRLTYLTEDIGFN 288
           R   Q G + D   I YGI     +++Y+   S+  +  NE+     T  +ED+G N
Sbjct: 284 RIHRQKGHVEDHLYI-YGIASTYTRWIYHGEQSDAGINENEDHLDEHTSFSEDVGIN 339


>02_05_0008 +
           24934917-24935229,24936387-24936608,24936876-24937591,
           24937646-24937728,24938448-24938514,24938833-24939228,
           24939276-24939318,24939380-24939474,24940287-24940314,
           24940636-24940754
          Length = 693

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 12/38 (31%), Positives = 16/38 (42%)
 Frame = +1

Query: 247 EQRLTYLTEDIGFNSYYYYFHSHLPFWWSSERYGNLKH 360
           E+ + +    IG   Y  Y   + PF       GNLKH
Sbjct: 281 EESIHFFMRSIGLREYSRYLCFNFPFTHEKSLLGNLKH 318


>01_06_0693 - 31280108-31281271
          Length = 387

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 17/63 (26%), Positives = 33/63 (52%), Gaps = 5/63 (7%)
 Frame = +1

Query: 91  FVNMDTLLKIYRTKMQDGILHDAKAINYGIVKEEEQYVYYANYSNTF-----LYNNEEQR 255
           ++ MDT+  ++R  +++G+  D +A+N  +VK   Q ++  +    F     +Y  E   
Sbjct: 196 YMYMDTVSALFRQMLEEGVPPDTRALNV-LVKGYAQSLHLNDALRVFHQMRPVYGCEPDA 254

Query: 256 LTY 264
           LTY
Sbjct: 255 LTY 257


>04_04_0451 - 25323178-25323241,25323614-25323741,25324533-25324634,
            25325314-25325382,25325489-25325557,25325646-25325720,
            25325805-25325909,25326394-25326492,25326626-25328344,
            25328629-25328931,25329031-25329129,25329733-25329850,
            25329933-25330018,25330091-25330159,25330232-25330306,
            25330675-25330772,25331271-25331432,25332391-25332556,
            25332902-25332970,25333064-25333126,25333221-25333376,
            25334027-25334365
          Length = 1410

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 13/23 (56%), Positives = 16/23 (69%)
 Frame = +2

Query: 422  VLQTAWVPYLNSLGTRLLRLVTI 490
            +L  A+VPYL  L +  LRLVTI
Sbjct: 1359 MLGKAFVPYLEGLNSTQLRLVTI 1381


>02_04_0622 - 24508508-24508666,24509533-24509634,24510108-24510176,
            24510294-24510362,24510428-24510502,24510584-24510688,
            24511309-24511407,24511521-24513230,24513489-24513788,
            24514748-24514846,24514962-24515079,24515166-24515251,
            24515334-24515402,24515746-24515843,24516373-24516534,
            24516779-24516787,24516970-24516991,24517620-24517712,
            24517872-24517940,24518720-24518782,24518882-24519037,
            24520895-24521230
          Length = 1355

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 13/23 (56%), Positives = 16/23 (69%)
 Frame = +2

Query: 422  VLQTAWVPYLNSLGTRLLRLVTI 490
            +L  A+VPYL  L +  LRLVTI
Sbjct: 1315 MLGKAFVPYLEGLNSTQLRLVTI 1337


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,436,333
Number of Sequences: 37544
Number of extensions: 255560
Number of successful extensions: 606
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 593
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 606
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1154538620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)