Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0007_J02
         (619 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A3.08 |pof4||elongin-A, F-box protein Pof4|Schizosaccharom...    32   0.076
SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2 |Schiz...    27   1.6  
SPAC23D3.08 |usp108||U1 snRNP-associated protein Usp108|Schizosa...    26   3.8  
SPAC824.08 |gda1|gdp1|guanosine-diphosphatase Gda1|Schizosacchar...    25   6.6  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    25   6.6  
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    25   6.6  
SPAC6B12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyces...    25   8.8  
SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyce...    25   8.8  

>SPBC29A3.08 |pof4||elongin-A, F-box protein
           Pof4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 199

 Score = 31.9 bits (69), Expect = 0.076
 Identities = 22/49 (44%), Positives = 27/49 (55%)
 Frame = -3

Query: 476 TKLDLKEANDGIDPATYLPVAARPFALARLMSSCCPTGTLSSLPAQARS 330
           TKL+  + N  I P    P AARP    R MS+ CP    SSL A+A+S
Sbjct: 111 TKLEQSKQNKRIVPLEREPRAARPPKRPRPMSNYCPK---SSLMARAKS 156


>SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 527

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -3

Query: 245 TEASSSDWPPERKVTPGTAAGTVLSK 168
           T A+ S+ PP   VTP TA  + LS+
Sbjct: 342 TSANYSNTPPRNTVTPSTARSSTLSQ 367


>SPAC23D3.08 |usp108||U1 snRNP-associated protein
           Usp108|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 382

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 17/67 (25%), Positives = 38/67 (56%), Gaps = 3/67 (4%)
 Frame = +1

Query: 85  LKPNMVTAGQSCKKTYTPMDIARATV--TALLRTVPAAVPGVTFLSGGQSEEEASVNLN- 255
           ++  ++  GQ   +TY+  + AR     T+ +  + +++P +  +     EE+AS+N+N 
Sbjct: 54  IQQEILKNGQVRVETYSSSNTARKIFICTSSVSNLASSIPALIKVVTPTKEEDASLNINL 113

Query: 256 AINSVDL 276
           A++S+ L
Sbjct: 114 AVSSLIL 120


>SPAC824.08 |gda1|gdp1|guanosine-diphosphatase
           Gda1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 556

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -2

Query: 372 SNGNIILFAGPSTEHGSLESAAVAER 295
           S  + ++F GPS  H SL+   +AE+
Sbjct: 382 SEASEVVFVGPSLAHLSLQCRGIAEK 407


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 23/83 (27%), Positives = 39/83 (46%), Gaps = 1/83 (1%)
 Frame = -3

Query: 383 SSCCPTGTLSS-LPAQARSTEAWRARP*LNVSTQGLFRSTELIAFRLTEASSSDWPPERK 207
           +S   TGT SS LP+ + S     + P    ST  +   T  +    T ++S+  PP   
Sbjct: 320 ASTSSTGTSSSPLPSTSTSCTTSTSIPPTGNSTTPV---TPTVPPTSTSSTSTPPPPAST 376

Query: 206 VTPGTAAGTVLSKAVTVARAISI 138
            + GT++  +LS + +   + SI
Sbjct: 377 SSTGTSSSPLLSTSTSCTTSTSI 399


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 20/96 (20%), Positives = 39/96 (40%)
 Frame = -3

Query: 434  ATYLPVAARPFALARLMSSCCPTGTLSSLPAQARSTEAWRARP*LNVSTQGLFRSTELIA 255
            +T +PV +       + S+   T ++      + ++ +W A      S+  +  S     
Sbjct: 892  STSIPVTSS--VAPAVTSTGSETSSVVGSGTDSATSSSWTAE----TSSSAITSSVAASV 945

Query: 254  FRLTEASSSDWPPERKVTPGTAAGTVLSKAVTVARA 147
               + +S+S W    +V P TAA    S   ++A A
Sbjct: 946  TPTSSSSASSWSSSSEVDPSTAASATGSSTSSIATA 981


>SPAC6B12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 456

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = +2

Query: 380 NSSSVPRRTVSQPPANTSPDLS 445
           N  S P  +  QPP NT P +S
Sbjct: 106 NVPSTPSDSTQQPPTNTLPSVS 127


>SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1261

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
 Frame = -2

Query: 396 GTLDEFLLSNGNIILFAGPSTEHGSLESAAVAERQYPGSLQIDR-VDSIQVNGS 238
           G+LDE L    + I+F   S + G  + +    +Q P    + R VD++  N S
Sbjct: 55  GSLDERLFLTEDDIIFHDRSIQLGYFDPSLSERKQSPPGKSLHRFVDNLNPNSS 108


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,337,585
Number of Sequences: 5004
Number of extensions: 43653
Number of successful extensions: 128
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)