Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0007_J01
         (542 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4A8.04 |isp6|prb1|vacuolar serine protease Isp6|Schizosaccha...    29   0.59 
SPBC12C2.11 ||SPBC21D10.02|glutamine-fructose-6-phosphate transa...    27   1.8  
SPBC530.11c |||transcription factor |Schizosaccharomyces pombe|c...    25   7.2  

>SPAC4A8.04 |isp6|prb1|vacuolar serine protease
           Isp6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 467

 Score = 28.7 bits (61), Expect = 0.59
 Identities = 17/46 (36%), Positives = 27/46 (58%)
 Frame = +1

Query: 334 LAALADARIKYDDIQQAVCGYVFGDSTCGQRVLYQVGMTGIPIYNV 471
           LA ++   +KYDDI +    YV+ DS+ G  +   V  TG+ I++V
Sbjct: 189 LARISHKSVKYDDIGK----YVY-DSSAGDNITAYVVDTGVSIHHV 229


>SPBC12C2.11 ||SPBC21D10.02|glutamine-fructose-6-phosphate
           transaminase |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 696

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = +3

Query: 357 HQIRRHSASSLWLCIR*FDLRPASLVPGWYDRYTYLQ-CEQ 476
           H++RR    S    I   ++  AS++ G YD Y   + CEQ
Sbjct: 308 HRLRREGGGSTTRTIETLEMEIASVMKGNYDHYMIKEICEQ 348


>SPBC530.11c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 819

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 7/31 (22%), Positives = 20/31 (64%)
 Frame = +3

Query: 396 CIR*FDLRPASLVPGWYDRYTYLQCEQQLFD 488
           C++ +  + ++  P W+ + T+ Q +Q+L++
Sbjct: 439 CLKSYSQKQSNPYPFWHAKSTFKQLDQELYE 469


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,274,251
Number of Sequences: 5004
Number of extensions: 46272
Number of successful extensions: 108
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 223909422
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)