Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0007_J01
         (542 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_1230 - 35099942-35100018,35100138-35100221,35100367-351004...    33   0.19 
01_06_0937 + 33175966-33178020                                         29   3.2  
10_08_0337 + 16900778-16900910,16902205-16902299,16904233-16905708     28   4.2  
04_04_0049 - 22356139-22357649,22357764-22357995                       28   4.2  
03_05_1161 - 30831043-30831151,30831641-30831759,30831880-308319...    28   5.5  
01_01_0953 - 7472173-7472178,7472216-7472311,7472370-7472462,747...    27   9.7  

>02_05_1230 -
           35099942-35100018,35100138-35100221,35100367-35100475,
           35100564-35100687,35101157-35101253,35101375-35101507,
           35101654-35101731,35101821-35101928,35102011-35102078,
           35102181-35102279,35102379-35102505,35102623-35102707,
           35103297-35103373,35103482-35103562
          Length = 448

 Score = 32.7 bits (71), Expect = 0.19
 Identities = 29/94 (30%), Positives = 37/94 (39%), Gaps = 9/94 (9%)
 Frame = +1

Query: 250 VFVVGVGMTNFIKPSTGG---DYPELGKEAVLAALAD-ARIKYDDIQQAVCGYVFGDST- 414
           V VV    T   K   GG    YPE     VL A+ D  +I   +I   V G V G  + 
Sbjct: 49  VVVVAAYRTPICKAKRGGFKDTYPEDLLTVVLKAVLDNTKINPGEIGDIVVGTVLGPGSQ 108

Query: 415 ----CGQRVLYQVGMTGIPIYNVNNNCSTGSNAL 504
               C     Y      +P+  VN  CS+G  A+
Sbjct: 109 RAIECRAAAFYAGVPENVPVRTVNRQCSSGLQAV 142


>01_06_0937 + 33175966-33178020
          Length = 684

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 16/44 (36%), Positives = 21/44 (47%)
 Frame = -3

Query: 453 TGHTNLVQDSLAASRITEYITTDCLLNVVVFDACVSQSGQHGFL 322
           TG  N  +   AA  + E +  DC  NVV F+  VS   Q G +
Sbjct: 465 TGLCNAERLDAAAELLAEMLQKDCAPNVVTFNVLVSFFCQKGLM 508


>10_08_0337 + 16900778-16900910,16902205-16902299,16904233-16905708
          Length = 567

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = -3

Query: 483 TVVVHIVDRYTGHTNLVQDSLAASRITEYITTDCLLNVV 367
           + V H+  R+ G    +Q++L ASR+  Y     +LN V
Sbjct: 481 STVAHVTRRHGGGGGWIQNNLNASRLDHYYAFFAVLNCV 519


>04_04_0049 - 22356139-22357649,22357764-22357995
          Length = 580

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = -2

Query: 445 YQPGTRLAGRKSNHRIHNHRLLAE 374
           +QP T L G++S  R+HN + LAE
Sbjct: 465 FQP-THLGGQRSEERMHNQKALAE 487


>03_05_1161 -
           30831043-30831151,30831641-30831759,30831880-30831906,
           30832117-30832158,30832293-30832392,30832481-30832545,
           30832619-30832694,30832878-30832939,30833248-30833253,
           30834704-30834782,30834890-30834957
          Length = 250

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = -1

Query: 431 KTRWPQVESPNT*PQTAC*MSSYLMRASARAANTASFP 318
           K +  QV+   T PQT+   SS++MR +    N +++P
Sbjct: 181 KVQKQQVQWDQTQPQTSSSSSSFMMREALPTTNISNYP 218


>01_01_0953 - 7472173-7472178,7472216-7472311,7472370-7472462,
            7472855-7473019,7473689-7474821,7474902-7475426,
            7477077-7477249,7478737-7478831,7478893-7481688
          Length = 1693

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 12/35 (34%), Positives = 22/35 (62%)
 Frame = -1

Query: 119  NGSLIAKISID*KVHDKESIVTKVQLSSGFDHVTH 15
            N S+ +++ +  K+HD ES+V +++L     HV H
Sbjct: 1228 NQSIASELDLGKKLHDSESVVEELKLK--LHHVEH 1260


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,771,482
Number of Sequences: 37544
Number of extensions: 298347
Number of successful extensions: 657
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 645
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 657
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1210221432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)