Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0007_I23
         (625 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC13B11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 3...    28   0.95 
SPBC1773.13 |||aromatic aminotransferase |Schizosaccharomyces po...    27   1.7  
SPAC4G9.07 |mug133||S. pombe specific UPF0300 family protein 2|S...    27   2.2  
SPBP4H10.20 |nhm1|DcpS|m7G|Schizosaccharomyces pombe|chr 2|||Manual    27   2.9  
SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|ch...    26   3.8  
SPCC1795.08c |||histone acetyltransferase complex subunit |Schiz...    26   5.1  
SPBC651.10 |nse5||Smc5-6 complex non-SMC subunit Nse5|Schizosacc...    25   6.7  

>SPCC13B11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 138

 Score = 28.3 bits (60), Expect = 0.95
 Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 4/38 (10%)
 Frame = +2

Query: 407 RSYTKSHM----KLFHNVATKYYMRATHVYHNTPCRAP 508
           RS +++H+    K  HNVA+K Y+R +HV    PC  P
Sbjct: 94  RSMSENHLIITKKSLHNVASKDYIRGSHV----PCFQP 127


>SPBC1773.13 |||aromatic aminotransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 481

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 28/85 (32%), Positives = 40/85 (47%), Gaps = 3/85 (3%)
 Frame = +2

Query: 275 NQRYQPVLDRVAAQIWDSPADVYEIPVGLPLAVFPKNKF---LQEALRSYTKSHMKLFHN 445
           N  +   + R+A    +SP+ + +  +   L  + +  F   LQE   SYT      F N
Sbjct: 310 NSMFIDHITRIAEVCTESPSGICQSVLYAMLHNWGQEGFCAWLQELQYSYTVRR-NAFLN 368

Query: 446 VATKYYMRATHVYHNTPCRAPGLFL 520
           VA KY   +  +YH  P RA GLFL
Sbjct: 369 VANKYLPNSVCIYH-VP-RA-GLFL 390


>SPAC4G9.07 |mug133||S. pombe specific UPF0300 family protein
           2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 513

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 13/66 (19%), Positives = 32/66 (48%)
 Frame = +2

Query: 26  NWMLAKSNHVMKYANIYLEQDYDVVNVSCSPLQLMWPLKGSQVIAAELMNFLESNKDFAH 205
           NW+   + + M Y     + ++D +  +C  +  ++PL  S    A L+  + ++ + + 
Sbjct: 316 NWIAIVTRNFMAYIETKRKLEFDSIPFNCPLITQLFPLISSPKEMAWLLLIVCTDSNESW 375

Query: 206 YVVHGF 223
           + VH +
Sbjct: 376 FPVHAY 381


>SPBP4H10.20 |nhm1|DcpS|m7G|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 304

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 13/45 (28%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
 Frame = +2

Query: 359 LPLAVFPKNKFLQEALRSYT--KSHMKLFHNVATKYYMRATHVYH 487
           +PL    +NK L E  + ++  K+ +K+F +    YY    H+ H
Sbjct: 205 IPLLENIRNKVLTEVPKQFSVDKNQLKMFVHYLPSYYHLHVHILH 249


>SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 867

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 11/19 (57%), Positives = 14/19 (73%), Gaps = 2/19 (10%)
 Frame = +2

Query: 476 HVYHNTPCRAPGL--FLCS 526
           HV+HNTP +A GL   +CS
Sbjct: 517 HVFHNTPMKAIGLLNLICS 535


>SPCC1795.08c |||histone acetyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 985

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 15/65 (23%), Positives = 30/65 (46%)
 Frame = +2

Query: 290 PVLDRVAAQIWDSPADVYEIPVGLPLAVFPKNKFLQEALRSYTKSHMKLFHNVATKYYMR 469
           P +DR   +     A ++E+ V +PL + P +KF  E ++    S   L     +  ++R
Sbjct: 370 PTIDRTGVE-----APLFELSVSMPLTLIPPSKF-SEPVKPELSSEAWLLRTEMSPLHLR 423

Query: 470 ATHVY 484
             + +
Sbjct: 424 LKNAH 428


>SPBC651.10 |nse5||Smc5-6 complex non-SMC subunit
           Nse5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 388

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = -3

Query: 263 LAPTTLPIRKLRQKNRVQHNEQSLCSTLRSS 171
           L PT+LP  K+RQK  ++     L S LR S
Sbjct: 304 LLPTSLPKNKIRQKLHLRAWVSFLGSALRES 334


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,881,420
Number of Sequences: 5004
Number of extensions: 63902
Number of successful extensions: 180
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 180
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 275671126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)