Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0007_I23
         (625 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0703 - 5785599-5785607,5785954-5786008,5786572-5786627,578...    30   1.3  
06_03_1501 + 30612643-30613310,30613396-30613501,30613732-306139...    29   2.3  
06_01_0728 - 5356400-5356676,5356888-5357090,5357181-5357474,535...    29   3.0  
10_01_0266 + 2816391-2818898,2818934-2819162,2819369-2819444,281...    28   6.9  
12_01_0109 + 853043-853426,853653-853787,853866-854138                 27   9.2  
02_02_0473 - 10727908-10728052,10728367-10728440,10728660-107288...    27   9.2  

>11_01_0703 -
           5785599-5785607,5785954-5786008,5786572-5786627,
           5786750-5786923,5787509-5787694,5787892-5788048,
           5788144-5788372,5788909-5789167,5789453-5789554
          Length = 408

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 22/84 (26%), Positives = 37/84 (44%)
 Frame = +2

Query: 248 ELLVQATENNQRYQPVLDRVAAQIWDSPADVYEIPVGLPLAVFPKNKFLQEALRSYTKSH 427
           E+ ++  E ++  +P +  +  QI +  A + E+P+   L   P +      L S   SH
Sbjct: 279 EIALKCMETDRENRPNIVEIINQINEKEAIIGELPIDHALEKLPSHNNESVTLESKLPSH 338

Query: 428 MKLFHNVATKYYMRATHVYHNTPC 499
           + L     TK    A H  HN+ C
Sbjct: 339 LNLNE---TKENHEADH--HNSSC 357


>06_03_1501 +
           30612643-30613310,30613396-30613501,30613732-30613934,
           30614211-30614502
          Length = 422

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 23/111 (20%), Positives = 53/111 (47%), Gaps = 7/111 (6%)
 Frame = +2

Query: 17  IIMNWMLAKSNHVMKYANIYLEQDYDVVNVSCSPLQLM------WPLKGSQVIAAELMNF 178
           +++ W+ ++  H+ +YA+ Y  + Y  V  +     ++         K  ++++  L ++
Sbjct: 143 VLLGWLGSRQKHLKRYADWYTSRGYHAVTFTLPMSDIVSYNVGGKAEKNVEMLSEHLADW 202

Query: 179 LESNKDFAHYVVHGFSVGAYVWAELLVQATENNQRYQP-VLDRVAAQIWDS 328
           + S +D    V H FS   ++   +++   EN QR  P  +D++   + DS
Sbjct: 203 V-SEEDGKKIVFHTFSNTGWLCYGVIL---ENLQRQDPSAMDKIKGCVVDS 249


>06_01_0728 -
           5356400-5356676,5356888-5357090,5357181-5357474,
           5357940-5358063,5358157-5359496
          Length = 745

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 12/24 (50%), Positives = 15/24 (62%), Gaps = 3/24 (12%)
 Frame = -1

Query: 331 WGVPYLC---GHAVQHWLIPLVVF 269
           W V  +C   GH V HW++ LVVF
Sbjct: 204 WCVMVICVFSGHLVSHWVVTLVVF 227


>10_01_0266 +
           2816391-2818898,2818934-2819162,2819369-2819444,
           2819776-2819830,2822042-2822110,2823077-2823321,
           2824029-2824065
          Length = 1072

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
 Frame = +2

Query: 137 LKGSQVIAAELMNFLESNKDFAHYVVHGFSVGAYVWAELLVQATEN-NQRYQPVLDRVAA 313
           L G  +  A   N +  N  F+H+  +GF   A VWAE L   + N +   + +LD    
Sbjct: 737 LTGRLIKLAFQPNTVTINILFSHFCKNGFGKRALVWAEKLRDDSFNFDDATRNILDWAYR 796

Query: 314 QIWDSP 331
            + D P
Sbjct: 797 DMEDDP 802


>12_01_0109 + 853043-853426,853653-853787,853866-854138
          Length = 263

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
 Frame = +2

Query: 173 NFLESNKDFAHYV-VHGFSVGAYVWAELLVQATENNQRYQPV 295
           +F ES +   H+V VHG   GA+ W  LL    ++  R   V
Sbjct: 8   DFSESCRSTEHFVLVHGAGHGAWCWFRLLRLLQDSGHRVSAV 49


>02_02_0473 - 10727908-10728052,10728367-10728440,10728660-10728818,
            10729606-10729774,10730216-10730355,10730469-10730879,
            10731055-10731334,10731508-10731571,10731995-10733281,
            10733363-10733822,10733988-10734356
          Length = 1185

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
 Frame = -3

Query: 437  TVSYAILC-MILKLPAGIYFLGTPLEVNRLVFRRHQLGSPI 318
            T +Y  LC    K  AG  F G P+ +   V +R  +G P+
Sbjct: 888  TATYRALCEACTKTDAGAIFAGCPMLLQLWVAKRFAIGRPV 928


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,004,044
Number of Sequences: 37544
Number of extensions: 419911
Number of successful extensions: 1076
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1051
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1076
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1513903616
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)