Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0007_I22
         (408 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase Ogm4|Schizo...    28   0.64 
SPBC29A10.07 |||nucleoporin Pom152|Schizosaccharomyces pombe|chr...    27   0.85 
SPCC1840.06 |atp5||F0-ATPase delta subunit|Schizosaccharomyces p...    26   2.0  
SPAC22F8.06 |pam1||20S proteasome component beta 6|Schizosacchar...    25   4.5  
SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic...    25   6.0  
SPAC23G3.12c |||serine protease |Schizosaccharomyces pombe|chr 1...    24   7.9  
SPBC15D4.09c |||cystathionine gamma-synthase |Schizosaccharomyce...    24   7.9  
SPAC458.06 |||phosphoinositide binding protein|Schizosaccharomyc...    24   7.9  

>SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase
           Ogm4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 778

 Score = 27.9 bits (59), Expect = 0.64
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = -2

Query: 191 SFTPVDDNHTLISNFYPVIVHKHRVGGSFSHLHHEGF 81
           S  P+  N T++ N+Y ++  KH    +F H H E +
Sbjct: 328 SDNPITANSTIL-NYYDIVTIKHMGTNAFLHSHPEKY 363


>SPBC29A10.07 |||nucleoporin Pom152|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1250

 Score = 27.5 bits (58), Expect = 0.85
 Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
 Frame = -2

Query: 203 RAAHSFTPVD-DNHTLISNFYPVIVHK 126
           R AH +T  D ++H+L  N Y V VH+
Sbjct: 401 RFAHGYTEADGESHSLPENVYSVFVHQ 427


>SPCC1840.06 |atp5||F0-ATPase delta subunit|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 216

 Score = 26.2 bits (55), Expect = 2.0
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -2

Query: 191 SFTPVDDNHTLISNFYPVIVHKHRV 117
           S T +  N  L+ NFY V++  HR+
Sbjct: 97  SLTQMTGNEPLLKNFYNVLLDNHRL 121


>SPAC22F8.06 |pam1||20S proteasome component beta
           6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 225

 Score = 25.0 bits (52), Expect = 4.5
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = +3

Query: 282 YPYWMTDEVYGLNKERQGEILMY 350
           +PY++   V G++KE +GEI  +
Sbjct: 106 FPYYVYTTVAGIDKEGKGEIYSF 128


>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
           subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1729

 Score = 24.6 bits (51), Expect = 6.0
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +3

Query: 180 WRKGVRRSLSEDDKYSYFTED 242
           WR+   R L EDD  SY ++D
Sbjct: 5   WREQEGRGLFEDDANSYVSDD 25


>SPAC23G3.12c |||serine protease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 996

 Score = 24.2 bits (50), Expect = 7.9
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = +3

Query: 321 KERQGEILMYANSQLLARL 377
           K ++G+IL+Y NS +L  L
Sbjct: 317 KLKEGDILLYVNSMILINL 335


>SPBC15D4.09c |||cystathionine gamma-synthase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 610

 Score = 24.2 bits (50), Expect = 7.9
 Identities = 8/34 (23%), Positives = 19/34 (55%)
 Frame = +3

Query: 150 VTDKSMVVIDWRKGVRRSLSEDDKYSYFTEDVDL 251
           +    +++ D  KG+R+ L   D+   +TE++ +
Sbjct: 109 IDSAEVIIYDATKGLRKHLDSIDRNRKYTEEIHI 142


>SPAC458.06 |||phosphoinositide binding protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 364

 Score = 24.2 bits (50), Expect = 7.9
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = +1

Query: 154 LIRVWLSSTGVKECAAR 204
           LIR+W S TG K C  R
Sbjct: 199 LIRIWNSETGEKICEFR 215


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,461,553
Number of Sequences: 5004
Number of extensions: 27092
Number of successful extensions: 85
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 140222766
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)