Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0007_I22
         (408 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_03_0107 - 12613491-12613538,12613906-12614139,12614682-126147...    27   4.3  
08_01_0578 + 5139324-5140190                                           27   7.6  
06_01_0247 + 1863549-1863978,1865001-1865261,1865346-1866221,186...    27   7.6  

>01_03_0107 -
           12613491-12613538,12613906-12614139,12614682-12614713,
           12616021-12616176,12617972-12618159,12618242-12618324,
           12618821-12618976,12620320-12621162,12621197-12621550,
           12621962-12623125
          Length = 1085

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +3

Query: 195 RRSLSEDDKYSYFTEDVDLNTYMYYLHMN 281
           + SL  + KY   +E  DL  + YY H+N
Sbjct: 652 KNSLINNTKYIVLSESGDLQVWRYYKHVN 680


>08_01_0578 + 5139324-5140190
          Length = 288

 Score = 26.6 bits (56), Expect = 7.6
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = -2

Query: 224 ILVVFR*RAAHSFTPVDDNHTLISNFYPVIVHKHRV 117
           +LV      AH   P D+N+ ++S  +   + +HRV
Sbjct: 207 VLVSRAQHGAHHRAPYDNNYCIVSGMWNATLDRHRV 242


>06_01_0247 +
           1863549-1863978,1865001-1865261,1865346-1866221,
           1866344-1866813
          Length = 678

 Score = 26.6 bits (56), Expect = 7.6
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -1

Query: 330 DALCSNRTLRQSSNTDNSYEGNTC 259
           D     R + QS+NTDN  EG+ C
Sbjct: 276 DGTVKTRQVPQSANTDNHCEGSGC 299


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,945,153
Number of Sequences: 37544
Number of extensions: 155880
Number of successful extensions: 350
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 345
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 350
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 718652880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)