Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0007_I20
         (636 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19B12.02c |||1,3-beta-glucanosyltransferase|Schizosaccharomy...    27   2.3  
SPAC22H10.03c |kap114||karyopherin Kap14|Schizosaccharomyces pom...    27   2.3  
SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual    27   3.0  
SPBC4F6.16c |ero11||ER oxidoreductin Ero1a|Schizosaccharomyces p...    27   3.0  
SPBC800.02 |whi5|mug54|cell cycle transcriptional repressor Whi5...    26   4.0  
SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein |S...    26   4.0  
SPAC1783.07c |pap1|caf3, caf3|transcription factor Caf3|Schizosa...    26   5.2  
SPAC4F10.04 |||protein phosphatase type 2A, intrinsic regulator ...    26   5.2  
SPCC576.06c |||tyrosine-tRNA ligase|Schizosaccharomyces pombe|ch...    25   6.9  
SPBC83.03c |tas3||RITS complex subunit 3 |Schizosaccharomyces po...    25   6.9  

>SPAC19B12.02c |||1,3-beta-glucanosyltransferase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 542

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -1

Query: 573 CKWKDSTRSCVIRELQSFGQYAKFHRY 493
           C+  DSTRSCVI +  S   Y+    Y
Sbjct: 367 CECMDSTRSCVINDDVSSDDYSDLFSY 393


>SPAC22H10.03c |kap114||karyopherin Kap14|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 986

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = +3

Query: 447 GYAIPPIYEVLPEYFNNGEILHTAQRI 527
           GY +PP+Y++   +  + E+L  +Q I
Sbjct: 666 GYVLPPVYKITQIHSGDTELLQLSQEI 692


>SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 978

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 14/58 (24%), Positives = 25/58 (43%)
 Frame = +3

Query: 48  DPVRTDDSVEFAKKQIDISLLYFHAREPNHVSKSITISASWSIENNINHYKNETAVKI 221
           D +R +D  +      ++ L Y +A+    V   + + A W    NIN   NE  + +
Sbjct: 178 DAIRANDMSDIVSFVYEMMLAYSNAKNYGTVGLCLQVYAQWVSWININLIVNEPCMNL 235


>SPBC4F6.16c |ero11||ER oxidoreductin Ero1a|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 467

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -3

Query: 118 WKYNKEISICFFANST 71
           WKYN ++  C+  NST
Sbjct: 116 WKYNPDLDYCYLDNST 131


>SPBC800.02 |whi5|mug54|cell cycle transcriptional repressor
           Whi5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 252

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -3

Query: 79  NSTESSVLTGSHNPGAKMSANTNKLK 2
           N  +SS L   H+P + M +NT KL+
Sbjct: 88  NDLDSSKLRRPHHPNSIMGSNTGKLR 113


>SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 971

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = +3

Query: 54  VRTDDSVEFAKKQIDISLLYF 116
           ++ D +V+ +KKQI  SLLYF
Sbjct: 262 IKKDSNVKCSKKQILFSLLYF 282


>SPAC1783.07c |pap1|caf3, caf3|transcription factor
           Caf3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 552

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +2

Query: 515 CPKDWSSRITHDRVLSFHLQN 577
           CPK WS  I H R  SF + +
Sbjct: 501 CPKVWSKIINHPRFESFDIDD 521


>SPAC4F10.04 |||protein phosphatase type 2A, intrinsic regulator
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 325

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 10/29 (34%), Positives = 20/29 (68%)
 Frame = +2

Query: 74  RVREKADRYFLIILPCSRTKSRFEIYNYF 160
           ++R+ A +   II+P S +K++ E+ +YF
Sbjct: 110 KLRDSASQIMDIIIPDSLSKAKVELLDYF 138


>SPCC576.06c |||tyrosine-tRNA ligase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 445

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 14/51 (27%), Positives = 27/51 (52%)
 Frame = +3

Query: 66  DSVEFAKKQIDISLLYFHAREPNHVSKSITISASWSIENNINHYKNETAVK 218
           +S+    K +  S+L + A++ N+    +  S+ WSI  N + Y+N   +K
Sbjct: 98  NSIHNQLKDLSSSILSY-AQDCNYPFSQMPSSSQWSIVRNSSWYENLKLLK 147


>SPBC83.03c |tas3||RITS complex subunit 3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 549

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +3

Query: 159 SASWSIENNINHYKNETAVKI 221
           + SWS  ++  HYKNE A  I
Sbjct: 276 NGSWSSTDDTKHYKNEWAESI 296


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,790,238
Number of Sequences: 5004
Number of extensions: 61236
Number of successful extensions: 162
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)