Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0007_I19
(396 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0901 + 12267042-12267182,12267949-12268095,12268163-122682... 29 1.4
01_05_0117 - 18300157-18301106,18301149-18301543,18302592-183026... 29 1.4
09_04_0300 - 16488358-16488447,16488684-16489116,16489377-164896... 27 4.1
09_04_0047 - 14139706-14140140,14140234-14140636,14141028-141412... 27 5.5
03_06_0539 - 34600323-34601273 27 7.2
03_06_0534 + 34570080-34571030 27 7.2
03_05_1096 - 30364144-30365310,30365825-30365971,30366087-303663... 27 7.2
01_05_0141 - 18532695-18532709,18533255-18533365,18533585-185336... 27 7.2
12_01_0366 + 2779754-2779882,2780007-2780047,2780163-2780212,278... 26 9.6
06_01_0520 + 3761990-3762327,3763304-3763589,3763746-3763820,376... 26 9.6
04_04_0433 + 25163111-25163471,25163943-25164154,25164420-251647... 26 9.6
04_03_0048 + 10157468-10158017,10158426-10158655 26 9.6
>03_02_0901 +
12267042-12267182,12267949-12268095,12268163-12268253,
12268367-12268485,12268779-12268969,12269440-12269650,
12270072-12270309,12270944-12271329,12271933-12271956,
12271984-12272077,12272341-12272525,12273025-12273255,
12273665-12273730,12273816-12274034,12274764-12275003,
12275244-12275423,12276269-12276535,12276612-12276815,
12276896-12277048
Length = 1128
Score = 29.1 bits (62), Expect = 1.4
Identities = 12/42 (28%), Positives = 24/42 (57%)
Frame = +1
Query: 178 DTLKYWDIGSAFLIGGNAKVYEGSGWVHVSVPTHAYNRKALR 303
+ ++Y+D L+GG E +G++ S+ H ++RK L+
Sbjct: 754 ELVEYFDPCHPILVGGIGLGEENTGYMQASLKRHRWHRKVLK 795
>01_05_0117 - 18300157-18301106,18301149-18301543,18302592-18302681,
18303723-18303836,18303903-18304046,18316147-18316312,
18316396-18317130,18317219-18317422,18317496-18318177,
18318272-18318528,18318604-18319298,18319345-18319382,
18319847-18319928,18320018-18320112,18320443-18320526,
18320601-18320891,18321521-18321853,18321948-18322150,
18322243-18322399,18322482-18322585,18322675-18322835,
18323511-18323824,18324317-18324589,18324666-18324967,
18325459-18325549,18326140-18326190,18326700-18326768,
18326926-18327017,18327082-18327148,18328582-18328746,
18329027-18329103,18329572-18329766,18330208-18330275,
18331081-18331172,18331399-18331522,18331608-18331705,
18332384-18332997,18333620-18333626
Length = 2892
Score = 29.1 bits (62), Expect = 1.4
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = -1
Query: 177 HMVILDASNSSGARIVRQALWS 112
HM ILD N G ++R+A WS
Sbjct: 2841 HMAILDEVNEYGENVLRRAFWS 2862
>09_04_0300 -
16488358-16488447,16488684-16489116,16489377-16489642,
16490015-16490044,16490282-16490606,16491752-16492035,
16492154-16492376,16493117-16493173,16494454-16494947
Length = 733
Score = 27.5 bits (58), Expect = 4.1
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = -1
Query: 369 RFQCVDLFCCWLLGMVIS 316
R+ CVD CCWL+G V S
Sbjct: 63 RWSCVDS-CCWLVGCVCS 79
>09_04_0047 -
14139706-14140140,14140234-14140636,14141028-14141272,
14141341-14141576,14141651-14141939
Length = 535
Score = 27.1 bits (57), Expect = 5.5
Identities = 25/87 (28%), Positives = 36/87 (41%), Gaps = 3/87 (3%)
Frame = +1
Query: 10 DCGIVSKDDWDGLTPVHVEYLNRPVKLVIIQHTDTPQ-CLTNDACAARVRSIQDYHMDTL 186
D +S D L P +V + KL + + P+ CLT+ A S + H T
Sbjct: 73 DMPSLSHDIVGRLMPHYVLWSGTYGKLFVYLYGSEPRLCLTDTALIKEFLSSKYAHA-TG 131
Query: 187 KYW--DIGSAFLIGGNAKVYEGSGWVH 261
K W G+ IGG + G+ W H
Sbjct: 132 KSWLQRQGTKHFIGGGLLMANGARWAH 158
>03_06_0539 - 34600323-34601273
Length = 316
Score = 26.6 bits (56), Expect = 7.2
Identities = 14/51 (27%), Positives = 25/51 (49%)
Frame = -3
Query: 190 ILTYPYGNPGCF*LERRTHRSSSIVECPCAGL*QASLGGSNIPRELESSRP 38
+L Y +P E RT ++ + PC+G + + G++ P S+RP
Sbjct: 166 VLCKVYRSPRAVCAEARTAAAAKSADSPCSGSKRKADDGADHPEAPPSARP 216
>03_06_0534 + 34570080-34571030
Length = 316
Score = 26.6 bits (56), Expect = 7.2
Identities = 14/51 (27%), Positives = 25/51 (49%)
Frame = -3
Query: 190 ILTYPYGNPGCF*LERRTHRSSSIVECPCAGL*QASLGGSNIPRELESSRP 38
+L Y +P E RT ++ + PC+G + + G++ P S+RP
Sbjct: 166 VLCKVYRSPRAVCAEARTAAAAKSADSPCSGSKRKADDGADHPEAPPSARP 216
>03_05_1096 - 30364144-30365310,30365825-30365971,30366087-30366393,
30366541-30366849,30367544-30370567,30370640-30372290,
30372373-30373463,30373544-30373646,30373737-30374439,
30374654-30375783,30375913-30376027,30376504-30376695,
30377443-30377616,30378438-30378494,30378581-30378716,
30378842-30378927,30379023-30379092,30379993-30380021,
30380444-30380456,30380762-30381006
Length = 3582
Score = 26.6 bits (56), Expect = 7.2
Identities = 10/30 (33%), Positives = 13/30 (43%)
Frame = +1
Query: 166 DYHMDTLKYWDIGSAFLIGGNAKVYEGSGW 255
D H + W + L+GG A Y G W
Sbjct: 2837 DSHQKSPSTWGATAKVLLGGRAWAYNGGAW 2866
>01_05_0141 -
18532695-18532709,18533255-18533365,18533585-18533617,
18534011-18534140,18534219-18535660,18535990-18536358
Length = 699
Score = 26.6 bits (56), Expect = 7.2
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +1
Query: 232 KVYEGSGWVHVSVPTHAYNRKALRIT 309
K +E SGW+HVS PT ++ + IT
Sbjct: 226 KHFEHSGWIHVS-PTFDVHKLTIAIT 250
>12_01_0366 +
2779754-2779882,2780007-2780047,2780163-2780212,
2780824-2780968,2781298-2781354,2781448-2781571,
2781798-2782259,2782493-2782564
Length = 359
Score = 26.2 bits (55), Expect = 9.6
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = +3
Query: 69 FEPPSEACHNPAHGHSTML 125
F P S H PA+GH T L
Sbjct: 281 FHPTSADAHRPAYGHGTPL 299
>06_01_0520 +
3761990-3762327,3763304-3763589,3763746-3763820,
3764013-3764961,3766967-3767064,3768144-3768284,
3768758-3768874,3768924-3769013,3769014-3771818
Length = 1632
Score = 26.2 bits (55), Expect = 9.6
Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Frame = +3
Query: 48 DSSSRGIFEPPSEACHNPAHG-HSTMLDERCVRRSS*KHPGL-PY 176
+SSS G F+ P + C + HG + L + H GL PY
Sbjct: 744 NSSSHGSFKSPCQTCSSSTHGERAATLSHKLADPMPLMHRGLKPY 788
>04_04_0433 +
25163111-25163471,25163943-25164154,25164420-25164701,
25164794-25164916,25165511-25165664,25165754-25165965,
25166143-25166212,25166294-25166424
Length = 514
Score = 26.2 bits (55), Expect = 9.6
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +1
Query: 88 LVIIQHTDTPQCLTNDACAARVRSIQDYHMDTL 186
+VI+ TD+ Q L+ D RVR+ D D L
Sbjct: 229 IVIVARTDSRQALSLDEALWRVRAFADAGADVL 261
>04_03_0048 + 10157468-10158017,10158426-10158655
Length = 259
Score = 26.2 bits (55), Expect = 9.6
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Frame = +1
Query: 235 VYEGSGWVHVSVPTHAYNRKALRI--TVIGNYHSQQ 336
VY+ SG++ V A+ R+ LR T +G H QQ
Sbjct: 92 VYDSSGYIDALVTRQAWLRRRLRTNRTGMGGTHHQQ 127
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,216,704
Number of Sequences: 37544
Number of extensions: 269092
Number of successful extensions: 599
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 587
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 599
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 684860244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -