Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0007_I19
         (396 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    21   6.8  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    21   6.8  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    21   6.8  
AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                21   6.8  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    20   9.0  

>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 20.6 bits (41), Expect = 6.8
 Identities = 6/17 (35%), Positives = 11/17 (64%)
 Frame = -1

Query: 282 RVSGHANVHPTGSFIYF 232
           + +GH  +HP  SF ++
Sbjct: 74  KAAGHWVIHPCSSFRFY 90


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 20.6 bits (41), Expect = 6.8
 Identities = 6/17 (35%), Positives = 11/17 (64%)
 Frame = -1

Query: 282 RVSGHANVHPTGSFIYF 232
           + +GH  +HP  SF ++
Sbjct: 74  KAAGHWVIHPCSSFRFY 90


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 20.6 bits (41), Expect = 6.8
 Identities = 6/17 (35%), Positives = 11/17 (64%)
 Frame = -1

Query: 282 RVSGHANVHPTGSFIYF 232
           + +GH  +HP  SF ++
Sbjct: 74  KAAGHWVIHPCSSFRFY 90


>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 20.6 bits (41), Expect = 6.8
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = -2

Query: 158 LLTRAAHASFVKHCGV 111
           +L    HASF+KH  +
Sbjct: 104 MLNSEKHASFLKHSNI 119


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 20.2 bits (40), Expect = 9.0
 Identities = 8/10 (80%), Positives = 9/10 (90%)
 Frame = -3

Query: 151 LERRTHRSSS 122
           LE+R HRSSS
Sbjct: 595 LEKREHRSSS 604


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 124,525
Number of Sequences: 438
Number of extensions: 2807
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used:  9761793
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)