Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0007_I18
         (589 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1604.05 |pgi1||glucose-6-phosphate isomerase |Schizosaccharo...    26   3.5  
SPAPB17E12.14c |||6-phosphofructo-2-kinase |Schizosaccharomyces ...    25   6.2  
SPAC1093.03 |||inositol polyphosphate phosphatase |Schizosacchar...    25   8.2  

>SPBC1604.05 |pgi1||glucose-6-phosphate isomerase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 550

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 8/21 (38%), Positives = 17/21 (80%)
 Frame = +2

Query: 434 DEHNRLIYDNYAAMTGASLIG 496
           ++H+R+++ N+AA T A ++G
Sbjct: 424 NKHHRMLFSNFAAQTEALMLG 444


>SPAPB17E12.14c |||6-phosphofructo-2-kinase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 474

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = +2

Query: 434 DEHNRLIYDNYAAMTGASLIGIR-FNSEQCDTSLDVCCTVPNTTTEND 574
           DE    +Y++Y+  +     G   FN +Q +TS +  C  P+  T ND
Sbjct: 253 DEFQERLYNDYSKESHLLQHGSHSFNGKQFETSFN--CLTPSENTVND 298


>SPAC1093.03 |||inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 832

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 14/54 (25%), Positives = 24/54 (44%)
 Frame = +2

Query: 422 YKLCDEHNRLIYDNYAAMTGASLIGIRFNSEQCDTSLDVCCTVPNTTTENDKSE 583
           Y L  +H+R +Y+NYA  +   +  I+                 N T ++D+SE
Sbjct: 764 YTLLSKHDRAMYNNYADYSPDKIKEIKEKELNTYNDYFNSAISENPTLKSDRSE 817


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,800,377
Number of Sequences: 5004
Number of extensions: 28330
Number of successful extensions: 72
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 72
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 254167452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)