Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0007_I18
         (589 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_03_0112 - 15363764-15364060,15364227-15364339,15364376-153644...    28   6.3  
08_01_0601 - 5268520-5271112,5272448-5272950                           27   8.4  
04_03_0625 + 18126856-18127444,18127561-18127725,18127827-18127834     27   8.4  

>02_03_0112 -
           15363764-15364060,15364227-15364339,15364376-15364478,
           15365174-15365218
          Length = 185

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 16/58 (27%), Positives = 29/58 (50%)
 Frame = +3

Query: 21  CFVIVLKKNLKIHRRMMRLQFVMVTVI*CHVQNRQRHLAALK*ISILIQISWANFSGK 194
           C ++ L  +LK + R      V  T+  C  ++      A + I +LI+ SW +F+G+
Sbjct: 74  CIILRLSDDLKSYERERLTLHVASTIDSCMKEHNIDIEMAYEKIHLLIEESWKDFNGE 131


>08_01_0601 - 5268520-5271112,5272448-5272950
          Length = 1031

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = -2

Query: 546  VQHTSRLVSHCSELNLIPIKLAP 478
            ++H S  V HC +LN  P+K+AP
Sbjct: 968  LRHVS--VFHCGKLNTFPVKMAP 988


>04_03_0625 + 18126856-18127444,18127561-18127725,18127827-18127834
          Length = 253

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = +2

Query: 65  NDASTICNGDRDLMSCSEQATTSGSSKVNINFDPDF 172
           N+ +++ +G      C E   T G +  N  FDPD+
Sbjct: 57  NNLTSLMDGACSGTGCCEATITEGHTSYNTMFDPDY 92


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,273,765
Number of Sequences: 37544
Number of extensions: 174696
Number of successful extensions: 450
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 443
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 450
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1388195172
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)