Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0007_I17
         (623 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1728 + 39480252-39480450,39480552-39481224,39481554-394816...    29   2.3  
11_01_0676 - 5511755-5511831,5512857-5513052,5513462-5513577,551...    28   5.2  
05_01_0372 - 2913518-2916562,2916674-2917528                           28   5.2  
02_05_1217 + 34999631-34999945,35000670-35000835,35001908-350020...    28   5.2  
01_03_0149 + 13194866-13195012,13196576-13196828,13197810-131981...    28   6.9  

>01_06_1728 +
           39480252-39480450,39480552-39481224,39481554-39481638,
           39481731-39481820,39481953-39482026,39482421-39482505,
           39482582-39482668,39482797-39482927,39483642-39483723,
           39483810-39483857,39484793-39484912
          Length = 557

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -3

Query: 339 FHPPNVSYSASEDKYGSRFLSANPLGFPVD 250
           +H P  SYS S+DK G   LS   + F V+
Sbjct: 322 YHTPKSSYSYSDDKLGGNVLSVGDIPFFVN 351


>11_01_0676 - 5511755-5511831,5512857-5513052,5513462-5513577,
            5513752-5514597,5515515-5515766,5522344-5525206
          Length = 1449

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 15/46 (32%), Positives = 20/46 (43%)
 Frame = +1

Query: 427  SCPFLKSFFFTLNNILSFHINFIS*LEIIDCKQVFRGLFDDHAFSC 564
            SCP LK  +FT N         +S    I C  +F   FD++   C
Sbjct: 1284 SCPALKELYFTKNCGFDSVYEILS--RSIQCLHIFHCQFDEYCDGC 1327


>05_01_0372 - 2913518-2916562,2916674-2917528
          Length = 1299

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 16/40 (40%), Positives = 20/40 (50%)
 Frame = -3

Query: 567 PAGESVIVKESTENLFTVDDFKSANEIYVKAQNIVEGKKE 448
           P      V+ESTE   TVDD  S    +V A++ VE   E
Sbjct: 297 PVSAESAVEESTEKEQTVDDTSSEMIAHVSAESAVEESTE 336


>02_05_1217 + 34999631-34999945,35000670-35000835,35001908-35002005,
            35002245-35002319,35002413-35002481,35002552-35002637,
            35002710-35002827,35003575-35003902,35003995-35005682,
            35005822-35005881,35005953-35006027,35006105-35006197,
            35006298-35006372,35006464-35006532,35006614-35006682,
            35006994-35007113
          Length = 1167

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
 Frame = +3

Query: 291  NHTCLRLHCRKRSV--DGIQKYRPSIHTAYHQHDLSVIKDGAGINHNVLSV 437
            N + L +  R R+V  +  Q + PSI   YHQ ++S +++   IN   +S+
Sbjct: 950  NESELNITVRNRNVILNSCQDHGPSISRTYHQDEMSQMEEVPEINGPSVSI 1000


>01_03_0149 +
           13194866-13195012,13196576-13196828,13197810-13198173,
           13198283-13198501,13199888-13200002,13200697-13200948,
           13201149-13201442
          Length = 547

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 20/64 (31%), Positives = 32/64 (50%)
 Frame = -3

Query: 621 LHVNSENFFLLNHFSHELPAGESVIVKESTENLFTVDDFKSANEIYVKAQNIVEGKKETL 442
           L++ S  F+LL    + + +G  +  K++  N F VDD +S   +Y  A   V G+K   
Sbjct: 114 LNLVSLRFYLLRKNGYNMSSGIFLSFKDNEGN-FIVDDTRSLLNLYNAANLRVYGEKVLD 172

Query: 441 EERT 430
           E  T
Sbjct: 173 EAAT 176


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,664,335
Number of Sequences: 37544
Number of extensions: 340987
Number of successful extensions: 864
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 839
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 864
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1513903616
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)