Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0007_I15
         (499 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC11E3.15 |rpl22|SPAP8A3.01|60S ribosomal protein L22|Schizosa...    67   2e-12
SPBC11C11.01 ||SPBC17D1.08|RNA-binding protein|Schizosaccharomyc...    31   0.096
SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein Pss1|Sch...    28   0.68 
SPCC1259.08 |||conserved fungal protein|Schizosaccharomyces pomb...    25   4.8  
SPAC4F8.03 ||SPAC644.01c|SBDS family ribosome maturation protein...    25   4.8  

>SPAC11E3.15 |rpl22|SPAP8A3.01|60S ribosomal protein
           L22|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 117

 Score = 66.9 bits (156), Expect = 2e-12
 Identities = 39/102 (38%), Positives = 55/102 (53%)
 Frame = +1

Query: 112 ISLKFTFDCALPV*DSILDVGDFEKYLKERVKVEGKTKYTWANHVVIARDKTQSRYQRRH 291
           +S K+  D    V D I DV  FEKYL +R+KV+GKT     + VV++R+ +       H
Sbjct: 8   VSNKYIIDATAAVNDKIFDVAAFEKYLIDRIKVDGKTG-NLGSSVVVSREGSSKIAVIAH 66

Query: 292 SLLEEVLSNT*PSVSL*KNNLRDWLRVVASAHDSYELRYFNI 417
                          L K++LRDWLRVV++    YELRY+N+
Sbjct: 67  IDFSGRYLKYLTKKFLKKHSLRDWLRVVSTKKGVYELRYYNV 108


>SPBC11C11.01 ||SPBC17D1.08|RNA-binding protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 493

 Score = 31.1 bits (67), Expect = 0.096
 Identities = 25/94 (26%), Positives = 43/94 (45%)
 Frame = +1

Query: 31  ERSVTPVRLVRMEYNVAKFAGKGAKRNISLKFTFDCALPV*DSILDVGDFEKYLKERVKV 210
           ER  T   L+   YN+ K    G +R+ + K   +      D I   G+ +KYL+ +   
Sbjct: 6   ERVNTNPSLISKSYNMKKRPVIGTRRHFARK-EIESDSDDEDDIFLAGERKKYLQNQSYE 64

Query: 211 EGKTKYTWANHVVIARDKTQSRYQRRHSLLEEVL 312
             K KY W+ +  I +   ++ +    +L EE+L
Sbjct: 65  RRKQKYVWSFN-NITKSVIRNEHGNNLTLQEELL 97


>SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein
           Pss1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 720

 Score = 28.3 bits (60), Expect = 0.68
 Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
 Frame = +1

Query: 160 ILDVGDFEKYLKE-RVKVEGKTKYTWANHVVIARDKTQSRYQRRHSLLEEVLSNT 321
           ++ V D    ++E R+  E   KY  A H +IA DK  +    R + LEE + +T
Sbjct: 536 LVKVADLSVSVQEDRLPTEVLEKYREAEHQMIATDKLVAETVDRKNALEEYIYDT 590


>SPCC1259.08 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 394

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 15/39 (38%), Positives = 18/39 (46%)
 Frame = -1

Query: 298 EGNVCVDSDFVSCPGR*QRDWPRCIWFCLQL*HVLSSIS 182
           E  +  D+DFV  PG    D P C+ F   L H  S  S
Sbjct: 281 ESQIPDDTDFV--PGTFDEDQPACLAFACSLTHANSKRS 317


>SPAC4F8.03 ||SPAC644.01c|SBDS family ribosome maturation
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 246

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 28/114 (24%), Positives = 45/114 (39%), Gaps = 3/114 (2%)
 Frame = +1

Query: 70  YNVAKFAGKG---AKRNISLKFTFDCALPV*DSILDVGDFEKYLKERVKVEGKTKYTWAN 240
           +NV     KG   +++++   F  D    +   IL  GDF+   KER      T     +
Sbjct: 54  HNVFNNVSKGHVASRQDLKKAFGTDDIDKIILEILQKGDFQVGEKERHHQMSSTYRDIVS 113

Query: 241 HVVIARDKTQSRYQRRHSLLEEVLSNT*PSVSL*KNNLRDWLRVVASAHDSYEL 402
           HV        S+     S++E+ LS+   SVS  K      L  +    +  E+
Sbjct: 114 HVTAMCMDPNSKRPYPASIIEKALSDCGFSVSTSKTAKSQALEAIKKLQEKNEI 167


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,856,911
Number of Sequences: 5004
Number of extensions: 33869
Number of successful extensions: 78
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 77
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 196153982
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)