Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0007_I15
         (499 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1662 + 28447419-28447666,28448429-28448573                       83   2e-16
03_02_0963 - 12769715-12769859,12770639-12770889                       80   1e-15
01_07_0160 - 41563109-41563468,41563566-41563985,41564082-415642...    27   6.3  
03_06_0579 + 34870958-34874578                                         27   8.4  
03_02_0927 - 12452262-12452428,12452538-12452607,12452689-124528...    27   8.4  

>07_03_1662 + 28447419-28447666,28448429-28448573
          Length = 130

 Score = 82.6 bits (195), Expect = 2e-16
 Identities = 46/116 (39%), Positives = 64/116 (55%), Gaps = 2/116 (1%)
 Frame = +1

Query: 76  VAKFAGKGAKRNISLKFTFDCALPV*DSILDVGDFEKYLKERVKVEGKTKYTWANHVVIA 255
           VA   G G K+  S+ F  DC+ PV D I+++   EK+L+ER+KV G       + V + 
Sbjct: 7   VAAKGGAGGKKKGSVSFVIDCSKPVEDKIMEIASLEKFLQERIKVAGGKAGNLGDSVTVT 66

Query: 256 RDKTQSRYQRRHSLLEEVLSNT*PSVSL*KNNLRDWLRVVASAHDS--YELRYFNI 417
           RDKT+       +  +  L        L K+N+RDWLRV+A+  D   YELRYFNI
Sbjct: 67  RDKTKVTVTSDGAFSKRYLKYL-TKKYLKKHNVRDWLRVIAANKDRNVYELRYFNI 121


>03_02_0963 - 12769715-12769859,12770639-12770889
          Length = 131

 Score = 79.8 bits (188), Expect = 1e-15
 Identities = 48/117 (41%), Positives = 63/117 (53%), Gaps = 4/117 (3%)
 Frame = +1

Query: 79  AKFAGKGA--KRNISLKFTFDCALPV*DSILDVGDFEKYLKERVKVEGKTKYTWANHVVI 252
           A   GKG   K+  S+ F  DCA PV D I+++   EK+L+ER+KV G         V +
Sbjct: 7   AAAGGKGGAGKKKGSVTFVIDCAKPVDDKIMEIASLEKFLQERIKVAGGKAGNLGESVTV 66

Query: 253 ARDKTQSRYQRRHSLLEEVLSNT*PSVSL*KNNLRDWLRVVASAHDS--YELRYFNI 417
           +RDKT+          +  L        L K+N+RDWLRV+AS  D   YELRYFNI
Sbjct: 67  SRDKTKVTVTSDGPFSKRYLKYL-TKKYLKKHNVRDWLRVIASNKDRNVYELRYFNI 122


>01_07_0160 -
           41563109-41563468,41563566-41563985,41564082-41564263,
           41564362-41564542,41565066-41565084,41565185-41565445,
           41566140-41566253,41566264-41566331,41566890-41567018,
           41567141-41567245,41567317-41567456,41567519-41567687,
           41567824-41567900,41568133-41568187,41568660-41568705,
           41568806-41568894,41568996-41569061,41569360-41569425,
           41569817-41569906,41570009-41570026
          Length = 884

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 12/20 (60%), Positives = 16/20 (80%)
 Frame = -3

Query: 98  PLPANFATLYSILTSLTGVT 39
           PL +NFA  +SI++ LTGVT
Sbjct: 411 PLVSNFAFSFSIISVLTGVT 430


>03_06_0579 + 34870958-34874578
          Length = 1206

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = -1

Query: 202 HVLSSISQSRQHPGC 158
           H LSS+ QSR+HP C
Sbjct: 821 HFLSSLLQSREHPRC 835


>03_02_0927 -
           12452262-12452428,12452538-12452607,12452689-12452830,
           12452937-12453117,12454068-12454203
          Length = 231

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
 Frame = +2

Query: 350 IFGTGSEWWLLRMTHMSFATSTS---MLIATMKTTRIKL 457
           IFG    WWL   + +SF T  S   +++  ++  RIK+
Sbjct: 62  IFGATMAWWLFEKSGLSFLTVCSDVLLILIVVQFIRIKV 100


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,110,871
Number of Sequences: 37544
Number of extensions: 226310
Number of successful extensions: 531
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 521
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 526
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1047416480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)