Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0007_I15
         (499 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58760-2|AAK31460.1|  130|Caenorhabditis elegans Ribosomal prote...    78   3e-15

>U58760-2|AAK31460.1|  130|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 22, isoform a protein.
          Length = 130

 Score = 78.2 bits (184), Expect = 3e-15
 Identities = 46/115 (40%), Positives = 65/115 (56%), Gaps = 1/115 (0%)
 Frame = +1

Query: 79  AKFAGKGA-KRNISLKFTFDCALPV*DSILDVGDFEKYLKERVKVEGKTKYTWANHVVIA 255
           AK A K   K+ + LKF  +C  PV D IL + D E +L E++KV GKT +  AN+V + 
Sbjct: 7   AKSAKKALRKKKVHLKFNVECKNPVEDGILRIEDLEAFLNEKIKVNGKTGHLAANNVKVE 66

Query: 256 RDKTQSRYQRRHSLLEEVLSNT*PSVSL*KNNLRDWLRVVASAHDSYELRYFNIN 420
             K++          +  L        L +N+LRDWLRVVA   ++YE+RYF+IN
Sbjct: 67  VAKSKVSVVSEVPFSKRYLKYL-TKKYLKRNSLRDWLRVVAVNKNTYEVRYFHIN 120


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,248,790
Number of Sequences: 27780
Number of extensions: 193369
Number of successful extensions: 469
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 453
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 467
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 945973702
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)