Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0007_I12
         (707 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78019-6|CAB01453.2|  370|Caenorhabditis elegans Hypothetical pr...    28   5.7  
U41994-8|AAK31524.1|  752|Caenorhabditis elegans Hypothetical pr...    28   5.7  
U40028-4|AAA81115.1|  758|Caenorhabditis elegans Hypothetical pr...    27   9.9  

>Z78019-6|CAB01453.2|  370|Caenorhabditis elegans Hypothetical
           protein ZK863.1 protein.
          Length = 370

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 23/62 (37%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
 Frame = +1

Query: 331 FVNTMTLSANVLCLNVPLKTSRNL--SCDLRNLYLPD--KDTYKWETVSAEKKLLVLIKR 498
           F+ T+    +VL   VP +T   L  + DLRN    D  K   K    SAEK+ +  IKR
Sbjct: 197 FMLTVLADISVLVSKVPWQTPFKLISADDLRNNNRSDNMKIVSKLNLESAEKRRINAIKR 256

Query: 499 CM 504
           C+
Sbjct: 257 CL 258


>U41994-8|AAK31524.1|  752|Caenorhabditis elegans Hypothetical
           protein F59A6.4 protein.
          Length = 752

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 13/31 (41%), Positives = 23/31 (74%)
 Frame = -1

Query: 458 VSHLYVSLSGKYKLRRSQLKFLEVFSGTLRH 366
           ++ LYV  +G++K++R ++KFL    GTLR+
Sbjct: 590 IAKLYVDENGEHKVKRKKVKFL----GTLRY 616


>U40028-4|AAA81115.1|  758|Caenorhabditis elegans Hypothetical
           protein T05A7.6 protein.
          Length = 758

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 13/31 (41%), Positives = 22/31 (70%)
 Frame = -1

Query: 458 VSHLYVSLSGKYKLRRSQLKFLEVFSGTLRH 366
           ++ LYV  +G +K++R ++KFL    GTLR+
Sbjct: 596 IAKLYVDENGVHKIKRKKVKFL----GTLRY 622


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,107,192
Number of Sequences: 27780
Number of extensions: 285601
Number of successful extensions: 767
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 757
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 767
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1645110168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)