Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0007_I11
(569 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po... 29 0.63
SPAC23H3.11c |||glucosidase |Schizosaccharomyces pombe|chr 1|||M... 27 1.5
SPAC6B12.09 |trm10||tRNA m|Schizosaccharomyces pombe|chr 1|||Manual 27 2.6
SPCC4G3.14 |mdj1||DNAJ domain protein Mdj1 |Schizosaccharomyces ... 27 2.6
SPAC26F1.09 |gyp51||GTPase activating protein Gyp51 |Schizosacch... 27 2.6
SPAC26A3.10 |||Arf GAP protein|Schizosaccharomyces pombe|chr 1||... 26 4.5
SPBC17A3.09c |||lipoate-protein ligase A |Schizosaccharomyces po... 26 4.5
SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr 3|... 25 5.9
SPAC27E2.03c |||GTP binding protein |Schizosaccharomyces pombe|c... 25 7.8
SPCC622.07 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual 25 7.8
SPCC1235.09 |||histone deacetylase complex subunit|Schizosacchar... 25 7.8
>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1014
Score = 28.7 bits (61), Expect = 0.63
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = +3
Query: 315 ILQLSSAMILMDSFYQLLMKFIHNSSLIWTLYLRFI 422
++ L+ A L + YQ S +WTLYL F+
Sbjct: 143 VITLTDAHSLFERAYQTCKFHFSKSQCVWTLYLEFL 178
>SPAC23H3.11c |||glucosidase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 629
Score = 27.5 bits (58), Expect = 1.5
Identities = 15/50 (30%), Positives = 29/50 (58%)
Frame = +2
Query: 380 PQFFVNMDTLLKIYRTKMQDGILHDAKAINYGIVKEEEQYVYYANYSNTF 529
P F ++D L +YR+K +D HD K+ ++ EE+ Y+ ++ + + F
Sbjct: 116 PSQFSSID-LSWVYRSKEEDDDFHDPKSSVVSLMGEED-YLGWSRFCDLF 163
>SPAC6B12.09 |trm10||tRNA m|Schizosaccharomyces pombe|chr 1|||Manual
Length = 304
Score = 26.6 bits (56), Expect = 2.6
Identities = 8/23 (34%), Positives = 14/23 (60%)
Frame = -1
Query: 152 DNRFCTISRILQQLSYWCSYRCW 84
D + T++++ + LS W YR W
Sbjct: 239 DRKILTVNQVFEILSLWLEYRDW 261
>SPCC4G3.14 |mdj1||DNAJ domain protein Mdj1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 528
Score = 26.6 bits (56), Expect = 2.6
Identities = 12/39 (30%), Positives = 17/39 (43%)
Frame = +2
Query: 5 LSLFQDVDQVNVDDEYYKIGKDYDVEANIDNYTNKKAVE 121
L + + + YYK+ K Y +AN D K VE
Sbjct: 91 LGVSKSASASEIKSAYYKLAKQYHPDANPDKAAQDKFVE 129
>SPAC26F1.09 |gyp51||GTPase activating protein Gyp51
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1031
Score = 26.6 bits (56), Expect = 2.6
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = +2
Query: 17 QDVDQVNVDDEYYKIGKDYDVEANIDN 97
Q+V Q+N +DEY + + D EA IDN
Sbjct: 55 QNVMQMNFEDEYSEFSNE-DDEAEIDN 80
>SPAC26A3.10 |||Arf GAP protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 923
Score = 25.8 bits (54), Expect = 4.5
Identities = 16/57 (28%), Positives = 29/57 (50%)
Frame = +2
Query: 392 VNMDTLLKIYRTKMQDGILHDAKAINYGIVKEEEQYVYYANYSNTFLYHNEEQRLTY 562
+NMD LL Y TK D + +NY ++ Y + N ++F+ +++RL +
Sbjct: 289 MNMDILLDSYLTKAMDIHATFIQKLNYDLI--NLLYEPFHNIYSSFIKPIDDRRLEF 343
>SPBC17A3.09c |||lipoate-protein ligase A |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 363
Score = 25.8 bits (54), Expect = 4.5
Identities = 12/41 (29%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Frame = +2
Query: 401 DTLLKIYRTKMQDG-ILHDAKAINYGIVKEEEQYVYYANYS 520
D + I R K G + HD +NY ++ E++ + N S
Sbjct: 83 DNFVNIIRRKSGGGTVFHDFGNLNYSVLMNREEFSHTENAS 123
>SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 843
Score = 25.4 bits (53), Expect = 5.9
Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Frame = -2
Query: 490 FLFYNSIIN-SLCIVKNTVLHFSAINLK*SVHINEE 386
FLF N N SLC ++T F + S+HI E
Sbjct: 699 FLFSNGSCNTSLCYYESTDPDFGGLKTPMSIHIERE 734
>SPAC27E2.03c |||GTP binding protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 392
Score = 25.0 bits (52), Expect = 7.8
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +2
Query: 80 EANIDNYTNKKAVEEFLKLYRIGYLPK 160
E + N+T ++A+EE KL LPK
Sbjct: 270 EERLTNFTEEEAIEECKKLNTKSMLPK 296
>SPCC622.07 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
Length = 128
Score = 25.0 bits (52), Expect = 7.8
Identities = 8/18 (44%), Positives = 14/18 (77%)
Frame = -2
Query: 496 LLFLFYNSIINSLCIVKN 443
++FLF N +++ +C VKN
Sbjct: 38 IIFLFLNYVVDIVCYVKN 55
>SPCC1235.09 |||histone deacetylase complex
subunit|Schizosaccharomyces pombe|chr 3|||Manual
Length = 564
Score = 25.0 bits (52), Expect = 7.8
Identities = 11/22 (50%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
Frame = +2
Query: 287 NEGQFL-YAYYIAVIQRNDTHG 349
N G FL YA++ VI+ D+HG
Sbjct: 274 NSGSFLAYAFFSGVIEIYDSHG 295
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,293,705
Number of Sequences: 5004
Number of extensions: 47326
Number of successful extensions: 139
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 242064240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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