Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0007_I10
         (449 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC30D10.15 |||snoRNP assembly factor |Schizosaccharomyces pomb...    26   3.1  
SPBC19F5.03 |||inositol polyphosphate phosphatase |Schizosacchar...    26   3.1  
SPBC30B4.08 |eri1||double-strand siRNA ribonuclease|Schizosaccha...    25   5.4  
SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces ...    24   9.4  
SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyc...    24   9.4  

>SPBC30D10.15 |||snoRNP assembly factor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 516

 Score = 25.8 bits (54), Expect = 3.1
 Identities = 15/56 (26%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
 Frame = -2

Query: 271 RKYFKAASEASKFEGDE---IRGINLNRLISKPIQQPNQEFEEIEINVLKKRIKEK 113
           R  F   + A+K + +    I+G + + +  + I    QEF + E  V  K++K+K
Sbjct: 325 RPVFYVPTMANKIDPEPLKYIKGSDASNVYDEEINPSEQEFSDDEAEVAAKQLKKK 380


>SPBC19F5.03 |||inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 598

 Score = 25.8 bits (54), Expect = 3.1
 Identities = 12/27 (44%), Positives = 19/27 (70%)
 Frame = +3

Query: 189 EINLLRFIPLISSPSNLLASEAALKYF 269
           E+N LR+ PL+ + S  +A+ AA K+F
Sbjct: 255 EVNNLRYKPLMVANSASMAAAAAKKHF 281


>SPBC30B4.08 |eri1||double-strand siRNA
           ribonuclease|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 313

 Score = 25.0 bits (52), Expect = 5.4
 Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 4/32 (12%)
 Frame = -2

Query: 238 KFEGDEIRGI----NLNRLISKPIQQPNQEFE 155
           +FEG E RGI    NL+R++ K   + N EFE
Sbjct: 258 QFEGSEHRGIDDARNLSRIVKKMCSE-NVEFE 288


>SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1888

 Score = 24.2 bits (50), Expect = 9.4
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = -2

Query: 214 GINLNRLISKPIQQPNQEFEEIEINVLKKRIKEKNILLELFKK 86
           G   + + S P    N  FE+ + N+ + + +E+N   E+FKK
Sbjct: 60  GSTKSSVSSLPELNRNVSFEKSDQNLAETKREEENKRTEVFKK 102


>SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 613

 Score = 24.2 bits (50), Expect = 9.4
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = -2

Query: 289 EAID*VRKYFKAASEASKFEGDEIRGINLNRLISKP 182
           +A+  V  YF  +  A+  +   I G+N+ R+I++P
Sbjct: 143 KAVITVPAYFSDSQRAATKDAGAIAGLNVLRIINEP 178


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,046,175
Number of Sequences: 5004
Number of extensions: 12263
Number of successful extensions: 48
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 48
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 166231220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)