Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0007_I09
         (557 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces po...    26   4.3  
SPBC216.01c ||SPBC713.13c|DNA damage response protein |Schizosac...    25   10.0 

>SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1564

 Score = 25.8 bits (54), Expect = 4.3
 Identities = 15/49 (30%), Positives = 27/49 (55%)
 Frame = +2

Query: 251  YIFGELKIKTRMNTILFLNITIQKTKKNTSNEIILINILYKLLFETHLI 397
            ++ G L++  R  + LF    I  T +    +I+L+N L+K +  +HLI
Sbjct: 1331 FVSGLLQLCHRKLSQLFEKAVINPTIE-VYGDIVLLNSLHKCIVNSHLI 1378


>SPBC216.01c ||SPBC713.13c|DNA damage response protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 836

 Score = 24.6 bits (51), Expect = 10.0
 Identities = 14/43 (32%), Positives = 19/43 (44%)
 Frame = -2

Query: 334 IFFCFLYCNIQKQYSIHSCLNF*FSKYIKIHFNFILRFLF*HE 206
           IFF    CNI K     SC    F+ ++K +    L +   HE
Sbjct: 370 IFFIQQVCNIAKGLQFQSCSAL-FATFVKFNLLKALDYAMSHE 411


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,794,135
Number of Sequences: 5004
Number of extensions: 31406
Number of successful extensions: 54
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 54
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 233995432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)